Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TUT4 (terminal uridylyl transferase 4)

Identity

Alias_namesZCCHC11
zinc finger CCHC-type containing 11
Alias_symbol (synonym)KIAA0191
PAPD3
TENT3A
Other alias
HGNC (Hugo) TUT4
LocusID (NCBI) 23318
Atlas_Id 50017
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 52423276 and ends at 52553090 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TUT4   28981
Cards
Entrez_Gene (NCBI)TUT4  23318  terminal uridylyl transferase 4
AliasesPAPD3; TENT3A; ZCCHC11
GeneCards (Weizmann)TUT4
Ensembl hg19 (Hinxton)ENSG00000134744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134744 [Gene_View]  ENSG00000134744 [Sequence]  chr1:52423276-52553090 [Contig_View]  TUT4 [Vega]
ICGC DataPortalENSG00000134744
TCGA cBioPortalTUT4
AceView (NCBI)TUT4
Genatlas (Paris)TUT4
WikiGenes23318
SOURCE (Princeton)TUT4
Genetics Home Reference (NIH)TUT4
Genomic and cartography
GoldenPath hg38 (UCSC)TUT4  -     chr1:52423276-52553090 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUT4  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTUT4 - 1p32.3 [CytoView hg19]  TUT4 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000134744
Mapping of homologs : NCBITUT4 [Mapview hg19]  TUT4 [Mapview hg38]
OMIM613692   
Gene and transcription
Genbank (Entrez)AK025698 AK095733 AK124868 AK307579 AK308427
RefSeq transcript (Entrez)NM_001009881 NM_001009882 NM_015269
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUT4
Cluster EST : UnigeneHs.655407 [ NCBI ]
CGAP (NCI)Hs.655407
Alternative Splicing GalleryENSG00000134744
Gene ExpressionTUT4 [ NCBI-GEO ]   TUT4 [ EBI - ARRAY_EXPRESS ]   TUT4 [ SEEK ]   TUT4 [ MEM ]
Gene Expression Viewer (FireBrowse)TUT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23318
GTEX Portal (Tissue expression)TUT4
Human Protein AtlasENSG00000134744-TUT4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TAX3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TAX3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TAX3
Splice isoforms : SwissVarQ5TAX3
PhosPhoSitePlusQ5TAX3
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)PAP_assoc    Polymerase_NTP_transf_dom    Znf_CCHC    Znf_CCHC_sf   
Domain families : Pfam (Sanger)NTP_transf_2 (PF01909)    PAP_assoc (PF03828)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam01909    pfam03828    pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  
Conserved Domain (NCBI)TUT4
DMDM Disease mutations23318
Blocks (Seattle)TUT4
SuperfamilyQ5TAX3
Human Protein Atlas [tissue]ENSG00000134744-TUT4 [tissue]
Peptide AtlasQ5TAX3
HPRD15708
IPIIPI00289861   IPI00935848   IPI00977508   IPI00981070   IPI00550431   IPI00981667   IPI00983723   IPI00983132   IPI00977601   IPI00975609   IPI00976712   IPI00979693   IPI00975697   IPI00985026   
Protein Interaction databases
DIP (DOE-UCLA)Q5TAX3
IntAct (EBI)Q5TAX3
FunCoupENSG00000134744
BioGRIDTUT4
STRING (EMBL)TUT4
ZODIACTUT4
Ontologies - Pathways
QuickGOQ5TAX3
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  oocyte maturation  RNA binding  protein binding  extracellular space  nucleolus  cytoplasm  cytosol  cytosol  zinc ion binding  negative regulation of transposition, RNA-mediated  miRNA metabolic process  miRNA metabolic process  miRNA catabolic process  stem cell population maintenance  pre-miRNA processing  pre-miRNA processing  RNA 3'-end processing  miRNA binding  cytoplasmic ribonucleoprotein granule  RNA uridylyltransferase activity  extracellular exosome  histone mRNA catabolic process  RNA 3' uridylation  polyuridylation-dependent mRNA catabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  oocyte maturation  RNA binding  protein binding  extracellular space  nucleolus  cytoplasm  cytosol  cytosol  zinc ion binding  negative regulation of transposition, RNA-mediated  miRNA metabolic process  miRNA metabolic process  miRNA catabolic process  stem cell population maintenance  pre-miRNA processing  pre-miRNA processing  RNA 3'-end processing  miRNA binding  cytoplasmic ribonucleoprotein granule  RNA uridylyltransferase activity  extracellular exosome  histone mRNA catabolic process  RNA 3' uridylation  polyuridylation-dependent mRNA catabolic process  
NDEx NetworkTUT4
Atlas of Cancer Signalling NetworkTUT4
Wikipedia pathwaysTUT4
Orthology - Evolution
OrthoDB23318
GeneTree (enSembl)ENSG00000134744
Phylogenetic Trees/Animal Genes : TreeFamTUT4
HOGENOMQ5TAX3
Homologs : HomoloGeneTUT4
Homology/Alignments : Family Browser (UCSC)TUT4
Gene fusions - Rearrangements
Fusion : MitelmanZDHHC11/RNF130 [5p15.33/5q35.3]  
Fusion : QuiverTUT4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUT4
dbVarTUT4
ClinVarTUT4
1000_GenomesTUT4 
Exome Variant ServerTUT4
ExAC (Exome Aggregation Consortium)ENSG00000134744
GNOMAD BrowserENSG00000134744
Varsome BrowserTUT4
Genetic variants : HAPMAP23318
Genomic Variants (DGV)TUT4 [DGVbeta]
DECIPHERTUT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUT4 
Mutations
ICGC Data PortalTUT4 
TCGA Data PortalTUT4 
Broad Tumor PortalTUT4
OASIS PortalTUT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTUT4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTUT4
Mutations and Diseases : HGMDTUT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TUT4
DgiDB (Drug Gene Interaction Database)TUT4
DoCM (Curated mutations)TUT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUT4 (select a term)
intoGenTUT4
Cancer3DTUT4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613692   
Orphanet
DisGeNETTUT4
MedgenTUT4
Genetic Testing Registry TUT4
NextProtQ5TAX3 [Medical]
TSGene23318
GENETestsTUT4
Target ValidationTUT4
Huge Navigator TUT4 [HugePedia]
snp3D : Map Gene to Disease23318
BioCentury BCIQTUT4
ClinGenTUT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23318
Chemical/Pharm GKB GenePA134918178
Clinical trialTUT4
Miscellaneous
canSAR (ICR)TUT4 (select the gene name)
DataMed IndexTUT4
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUT4
EVEXTUT4
GoPubMedTUT4
iHOPTUT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:13:42 CET 2019

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