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TUT7 (terminal uridylyl transferase 7)

Identity

Other aliasPAPD6
TENT3B
ZCCHC6
HGNC (Hugo) TUT7
LocusID (NCBI) 79670
Atlas_Id 80343
Location 9q21.33  [Link to chromosome band 9q21]
Location_base_pair Starts at 86287733 and ends at 86354487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TUT7   25817
Cards
Entrez_Gene (NCBI)TUT7  79670  terminal uridylyl transferase 7
AliasesPAPD6; TENT3B; ZCCHC6
GeneCards (Weizmann)TUT7
Ensembl hg19 (Hinxton)ENSG00000083223 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000083223 [Gene_View]  ENSG00000083223 [Sequence]  chr9:86287733-86354487 [Contig_View]  TUT7 [Vega]
ICGC DataPortalENSG00000083223
TCGA cBioPortalTUT7
AceView (NCBI)TUT7
Genatlas (Paris)TUT7
WikiGenes79670
SOURCE (Princeton)TUT7
Genetics Home Reference (NIH)TUT7
Genomic and cartography
GoldenPath hg38 (UCSC)TUT7  -     chr9:86287733-86354487 -  9q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TUT7  -     9q21.33   [Description]    (hg19-Feb_2009)
GoldenPathTUT7 - 9q21.33 [CytoView hg19]  TUT7 - 9q21.33 [CytoView hg38]
ImmunoBaseENSG00000083223
Mapping of homologs : NCBITUT7 [Mapview hg19]  TUT7 [Mapview hg38]
OMIM613467   
Gene and transcription
Genbank (Entrez)AB051498 AK023471 AK055546 AK055948 AK058021
RefSeq transcript (Entrez)NM_001185059 NM_001185074 NM_001330718 NM_024617
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TUT7
Cluster EST : UnigeneHs.597057 [ NCBI ]
CGAP (NCI)Hs.597057
Alternative Splicing GalleryENSG00000083223
Gene ExpressionTUT7 [ NCBI-GEO ]   TUT7 [ EBI - ARRAY_EXPRESS ]   TUT7 [ SEEK ]   TUT7 [ MEM ]
Gene Expression Viewer (FireBrowse)TUT7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79670
GTEX Portal (Tissue expression)TUT7
Human Protein AtlasENSG00000083223-TUT7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VYS8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VYS8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VYS8
Splice isoforms : SwissVarQ5VYS8
PhosPhoSitePlusQ5VYS8
Domaine pattern : Prosite (Expaxy)ZF_CCHC (PS50158)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)Matrin/U1-like-C_Znf_C2H2    PAP_assoc    Polymerase_NTP_transf_dom    Znf_CCHC    Znf_CCHC_sf   
Domain families : Pfam (Sanger)NTP_transf_2 (PF01909)    PAP_assoc (PF03828)    zf-CCHC (PF00098)   
Domain families : Pfam (NCBI)pfam01909    pfam03828    pfam00098   
Domain families : Smart (EMBL)ZnF_C2HC (SM00343)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)TUT7
DMDM Disease mutations79670
Blocks (Seattle)TUT7
PDB (RSDB)5W0B    5W0M    5W0N    5W0O   
PDB Europe5W0B    5W0M    5W0N    5W0O   
PDB (PDBSum)5W0B    5W0M    5W0N    5W0O   
PDB (IMB)5W0B    5W0M    5W0N    5W0O   
Structural Biology KnowledgeBase5W0B    5W0M    5W0N    5W0O   
SCOP (Structural Classification of Proteins)5W0B    5W0M    5W0N    5W0O   
CATH (Classification of proteins structures)5W0B    5W0M    5W0N    5W0O   
SuperfamilyQ5VYS8
Human Protein Atlas [tissue]ENSG00000083223-TUT7 [tissue]
Peptide AtlasQ5VYS8
IPIIPI00604491   IPI00374531   IPI00604680   IPI00552923   IPI00604635   IPI00336000   IPI00815815   IPI00643410   IPI00743063   
Protein Interaction databases
DIP (DOE-UCLA)Q5VYS8
IntAct (EBI)Q5VYS8
FunCoupENSG00000083223
BioGRIDTUT7
STRING (EMBL)TUT7
ZODIACTUT7
Ontologies - Pathways
QuickGOQ5VYS8
Ontology : AmiGOnuclear-transcribed mRNA poly(A) tail shortening  oocyte maturation  RNA binding  protein binding  nucleoplasm  cytoplasm  cytosol  cytosol  zinc ion binding  negative regulation of transposition, RNA-mediated  miRNA metabolic process  pre-miRNA processing  RNA 3'-end processing  miRNA binding  RNA uridylyltransferase activity  uridylyltransferase activity  histone mRNA catabolic process  RNA 3' uridylation  RNA 3' uridylation  polyuridylation-dependent mRNA catabolic process  
Ontology : EGO-EBInuclear-transcribed mRNA poly(A) tail shortening  oocyte maturation  RNA binding  protein binding  nucleoplasm  cytoplasm  cytosol  cytosol  zinc ion binding  negative regulation of transposition, RNA-mediated  miRNA metabolic process  pre-miRNA processing  RNA 3'-end processing  miRNA binding  RNA uridylyltransferase activity  uridylyltransferase activity  histone mRNA catabolic process  RNA 3' uridylation  RNA 3' uridylation  polyuridylation-dependent mRNA catabolic process  
NDEx NetworkTUT7
Atlas of Cancer Signalling NetworkTUT7
Wikipedia pathwaysTUT7
Orthology - Evolution
OrthoDB79670
GeneTree (enSembl)ENSG00000083223
Phylogenetic Trees/Animal Genes : TreeFamTUT7
HOGENOMQ5VYS8
Homologs : HomoloGeneTUT7
Homology/Alignments : Family Browser (UCSC)TUT7
Gene fusions - Rearrangements
Fusion : QuiverTUT7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTUT7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TUT7
dbVarTUT7
ClinVarTUT7
1000_GenomesTUT7 
Exome Variant ServerTUT7
ExAC (Exome Aggregation Consortium)ENSG00000083223
GNOMAD BrowserENSG00000083223
Varsome BrowserTUT7
Genetic variants : HAPMAP79670
Genomic Variants (DGV)TUT7 [DGVbeta]
DECIPHERTUT7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTUT7 
Mutations
ICGC Data PortalTUT7 
TCGA Data PortalTUT7 
Broad Tumor PortalTUT7
OASIS PortalTUT7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTUT7
BioMutasearch TUT7
DgiDB (Drug Gene Interaction Database)TUT7
DoCM (Curated mutations)TUT7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TUT7 (select a term)
intoGenTUT7
Cancer3DTUT7(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613467   
Orphanet
DisGeNETTUT7
MedgenTUT7
Genetic Testing Registry TUT7
NextProtQ5VYS8 [Medical]
TSGene79670
GENETestsTUT7
Target ValidationTUT7
Huge Navigator TUT7 [HugePedia]
snp3D : Map Gene to Disease79670
BioCentury BCIQTUT7
ClinGenTUT7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79670
Chemical/Pharm GKB GenePA134971144
Clinical trialTUT7
Miscellaneous
canSAR (ICR)TUT7 (select the gene name)
DataMed IndexTUT7
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTUT7
EVEXTUT7
GoPubMedTUT7
iHOPTUT7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:12:02 CEST 2019

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