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UBAP2 (ubiquitin associated protein 2)

Identity

Alias_symbol (synonym)KIAA1491
bA176F3.5
FLJ22435
Other aliasUBAP-2
HGNC (Hugo) UBAP2
LocusID (NCBI) 55833
Atlas_Id 56932
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33921693 and ends at 34048949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCYOX1 (2p13.3) / UBAP2 (9p13.3)TMEM37 (2q14.2) / UBAP2 (9p13.3)UBAP1 (9p13.3) / UBAP2 (9p13.3)
UBAP2 (9p13.3) / APTX (9p21.1)UBAP2 (9p13.3) / C15orf41 (15q14)UBAP2 (9p13.3) / DCAF12 (9p13.3)
UBAP2 (9p13.3) / FBXL2 (3p22.3)UBAP2 (9p13.3) / LOC100128288 (17p13.1)UBAP2 (9p13.3) / MLH1 (3p22.2)
UBAP2 (9p13.3) / NCF4 (22q12.3)UBAP2 (9p13.3) / TEAD1 (11p15.3)UBAP2 (9p13.3) / UBAP1 (9p13.3)
UBAP2 (9p13.3) / USP34 (2p15)ZNF160 (19q13.41) / UBAP2 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 7 ]

Solid Tumors TT_t0209p15p13ID105540 TT_t0909p13p13ID108395 TT_t0909p13p13ID108396 TT_t0909p13p21ID108409 TT_t0911p13p15ID108278
TT_t0915p13q14ID108322 TT_t0922p13q12ID108381

External links

Nomenclature
HGNC (Hugo)UBAP2   14185
Cards
Entrez_Gene (NCBI)UBAP2  55833  ubiquitin associated protein 2
AliasesUBAP-2
GeneCards (Weizmann)UBAP2
Ensembl hg19 (Hinxton)ENSG00000137073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137073 [Gene_View]  ENSG00000137073 [Sequence]  chr9:33921693-34048949 [Contig_View]  UBAP2 [Vega]
ICGC DataPortalENSG00000137073
TCGA cBioPortalUBAP2
AceView (NCBI)UBAP2
Genatlas (Paris)UBAP2
WikiGenes55833
SOURCE (Princeton)UBAP2
Genetics Home Reference (NIH)UBAP2
Genomic and cartography
GoldenPath hg38 (UCSC)UBAP2  -     chr9:33921693-34048949 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBAP2  -     9p13.3   [Description]    (hg19-Feb_2009)
GoldenPathUBAP2 - 9p13.3 [CytoView hg19]  UBAP2 - 9p13.3 [CytoView hg38]
ImmunoBaseENSG00000137073
Mapping of homologs : NCBIUBAP2 [Mapview hg19]  UBAP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040924 AB209911 AF157327 AK025357 AK025801
RefSeq transcript (Entrez)NM_001282529 NM_001282530 NM_001370059 NM_001370062 NM_001370064 NM_001370066 NM_001370067 NM_001370068 NM_018449 NM_020867
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBAP2
Alternative Splicing GalleryENSG00000137073
Gene ExpressionUBAP2 [ NCBI-GEO ]   UBAP2 [ EBI - ARRAY_EXPRESS ]   UBAP2 [ SEEK ]   UBAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55833
GTEX Portal (Tissue expression)UBAP2
Human Protein AtlasENSG00000137073-UBAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UBAP2
DMDM Disease mutations55833
Blocks (Seattle)UBAP2
Human Protein Atlas [tissue]ENSG00000137073-UBAP2 [tissue]
IPIIPI00171127   IPI00552603   IPI00053288   IPI00552813   IPI00552189   IPI01013830   IPI00238081   IPI01019076   IPI00432360   IPI00383229   IPI01018861   
Protein Interaction databases
FunCoupENSG00000137073
BioGRIDUBAP2
STRING (EMBL)UBAP2
ZODIACUBAP2
Ontologies - Pathways
Huge Navigator UBAP2 [HugePedia]
snp3D : Map Gene to Disease55833
BioCentury BCIQUBAP2
ClinGenUBAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55833
Chemical/Pharm GKB GenePA38379
Clinical trialUBAP2
Miscellaneous
canSAR (ICR)UBAP2 (select the gene name)
DataMed IndexUBAP2
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBAP2
EVEXUBAP2
GoPubMedUBAP2
iHOPUBAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:15:08 CET 2020
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