Atlas of Genetics and Cytogenetics in Oncology and Haematology

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UBAP2 (ubiquitin associated protein 2)

Identity

Alias (NCBI)UBAP-2
HGNC (Hugo) UBAP2
HGNC Alias symbKIAA1491
bA176F3.5
FLJ22435
LocusID (NCBI) 55833
Atlas_Id 56932
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 33921693 and ends at 34048949 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PCYOX1 (2p13.3) / UBAP2 (9p13.3)TMEM37 (2q14.2) / UBAP2 (9p13.3)UBAP1 (9p13.3) / UBAP2 (9p13.3)
UBAP2 (9p13.3) / APTX (9p21.1)UBAP2 (9p13.3) / C15orf41 (15q14)UBAP2 (9p13.3) / DCAF12 (9p13.3)
UBAP2 (9p13.3) / FBXL2 (3p22.3)UBAP2 (9p13.3) / LOC100128288 (17p13.1)UBAP2 (9p13.3) / MLH1 (3p22.2)
UBAP2 (9p13.3) / NCF4 (22q12.3)UBAP2 (9p13.3) / TEAD1 (11p15.3)UBAP2 (9p13.3) / UBAP1 (9p13.3)
UBAP2 (9p13.3) / USP34 (2p15)ZNF160 (19q13.41) / UBAP2 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 7 ]
  t(2;9)(p15;p13) UBAP2/USP34
UBAP1/UBAP2 (9p13)
UBAP2/DCAF12 (9p13)
t(9;9)(p13;p21) UBAP2/APTX
t(9;11)(p13;p15) UBAP2/TEAD1
t(9;15)(p13;q14) UBAP2/C15orf41
t(9;22)(p13;q12) UBAP2/NCF4

External links

Nomenclature
HGNC (Hugo)UBAP2   14185
Cards
Entrez_Gene (NCBI)UBAP2  55833  ubiquitin associated protein 2
AliasesUBAP-2
GeneCards (Weizmann)UBAP2
Ensembl hg19 (Hinxton)ENSG00000137073 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137073 [Gene_View]  ENSG00000137073 [Sequence]  chr9:33921693-34048949 [Contig_View]  UBAP2 [Vega]
ICGC DataPortalENSG00000137073
TCGA cBioPortalUBAP2
AceView (NCBI)UBAP2
Genatlas (Paris)UBAP2
WikiGenes55833
SOURCE (Princeton)UBAP2
Genetics Home Reference (NIH)UBAP2
Genomic and cartography
GoldenPath hg38 (UCSC)UBAP2  -     chr9:33921693-34048949 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBAP2  -     9p13.3   [Description]    (hg19-Feb_2009)
GoldenPathUBAP2 - 9p13.3 [CytoView hg19]  UBAP2 - 9p13.3 [CytoView hg38]
ImmunoBaseENSG00000137073
genome Data Viewer NCBIUBAP2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB040924 AB209911 AF157327 AK025357 AK025801
RefSeq transcript (Entrez)NM_001282529 NM_001282530 NM_001370059 NM_001370062 NM_001370064 NM_001370066 NM_001370067 NM_001370068 NM_018449 NM_020867
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBAP2
Alternative Splicing GalleryENSG00000137073
Gene ExpressionUBAP2 [ NCBI-GEO ]   UBAP2 [ EBI - ARRAY_EXPRESS ]   UBAP2 [ SEEK ]   UBAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)UBAP2 [ Firebrowse - Broad ]
GenevisibleExpression of UBAP2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55833
GTEX Portal (Tissue expression)UBAP2
Human Protein AtlasENSG00000137073-UBAP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T6F2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T6F2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T6F2
Splice isoforms : SwissVarQ5T6F2
PhosPhoSitePlusQ5T6F2
Domains : Interpro (EBI)UBA    UBA-like_sf    UBAP2/Lig   
Domain families : Pfam (Sanger)DUF3697 (PF12478)   
Domain families : Pfam (NCBI)pfam12478   
Domain families : Smart (EMBL)UBA (SM00165)  
Conserved Domain (NCBI)UBAP2
DMDM Disease mutations55833
Blocks (Seattle)UBAP2
SuperfamilyQ5T6F2
Human Protein Atlas [tissue]ENSG00000137073-UBAP2 [tissue]
Peptide AtlasQ5T6F2
IPIIPI00171127   IPI00552603   IPI00053288   IPI00552813   IPI00552189   IPI01013830   IPI00238081   IPI01019076   IPI00432360   IPI00383229   IPI01018861   
Protein Interaction databases
DIP (DOE-UCLA)Q5T6F2
IntAct (EBI)Q5T6F2
FunCoupENSG00000137073
BioGRIDUBAP2
STRING (EMBL)UBAP2
ZODIACUBAP2
Ontologies - Pathways
QuickGOQ5T6F2
Ontology : AmiGORNA binding  nucleus  cytoplasm  cadherin binding  
Ontology : EGO-EBIRNA binding  nucleus  cytoplasm  cadherin binding  
NDEx NetworkUBAP2
Atlas of Cancer Signalling NetworkUBAP2
Wikipedia pathwaysUBAP2
Orthology - Evolution
OrthoDB55833
GeneTree (enSembl)ENSG00000137073
Phylogenetic Trees/Animal Genes : TreeFamUBAP2
HOGENOMQ5T6F2
Homologs : HomoloGeneUBAP2
Homology/Alignments : Family Browser (UCSC)UBAP2
Gene fusions - Rearrangements
Fusion : QuiverUBAP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBAP2
dbVarUBAP2
ClinVarUBAP2
MonarchUBAP2
1000_GenomesUBAP2 
Exome Variant ServerUBAP2
GNOMAD BrowserENSG00000137073
Varsome BrowserUBAP2
Genetic variants : HAPMAP55833
Genomic Variants (DGV)UBAP2 [DGVbeta]
DECIPHERUBAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBAP2 
Mutations
ICGC Data PortalUBAP2 
TCGA Data PortalUBAP2 
Broad Tumor PortalUBAP2
OASIS PortalUBAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBAP2
Mutations and Diseases : HGMDUBAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBAP2
DgiDB (Drug Gene Interaction Database)UBAP2
DoCM (Curated mutations)UBAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBAP2 (select a term)
intoGenUBAP2
Cancer3DUBAP2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUBAP2
MedgenUBAP2
Genetic Testing Registry UBAP2
NextProtQ5T6F2 [Medical]
TSGene55833
GENETestsUBAP2
Target ValidationUBAP2
Huge Navigator UBAP2 [HugePedia]
snp3D : Map Gene to Disease55833
BioCentury BCIQUBAP2
ClinGenUBAP2
Clinical trials, drugs, therapy
Protein Interactions : CTD55833
Pharm GKB GenePA38379
Clinical trialUBAP2
Miscellaneous
canSAR (ICR)UBAP2 (select the gene name)
HarmonizomeUBAP2
DataMed IndexUBAP2
Probes
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBAP2
EVEXUBAP2
GoPubMedUBAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 14 14:37:52 CEST 2020
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