Atlas of Genetics and Cytogenetics in Oncology and Haematology

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UBXN8 (UBX domain protein 8)

Identity

Alias_namesUBXD6
UBX domain containing 6
Alias_symbol (synonym)D8S2298E
REP8
Other alias
HGNC (Hugo) UBXN8
LocusID (NCBI) 7993
Atlas_Id 75453
Location 8p12  [Link to chromosome band 8p12]
Location_base_pair Starts at 30744165 and ends at 30767004 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UBXN8   30307
Cards
Entrez_Gene (NCBI)UBXN8  7993  UBX domain protein 8
AliasesD8S2298E; REP8; UBXD6
GeneCards (Weizmann)UBXN8
Ensembl hg19 (Hinxton)ENSG00000104691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104691 [Gene_View]  ENSG00000104691 [Sequence]  chr8:30744165-30767004 [Contig_View]  UBXN8 [Vega]
ICGC DataPortalENSG00000104691
TCGA cBioPortalUBXN8
AceView (NCBI)UBXN8
Genatlas (Paris)UBXN8
WikiGenes7993
SOURCE (Princeton)UBXN8
Genetics Home Reference (NIH)UBXN8
Genomic and cartography
GoldenPath hg38 (UCSC)UBXN8  -     chr8:30744165-30767004 +  8p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UBXN8  -     8p12   [Description]    (hg19-Feb_2009)
GoldenPathUBXN8 - 8p12 [CytoView hg19]  UBXN8 - 8p12 [CytoView hg38]
ImmunoBaseENSG00000104691
Mapping of homologs : NCBIUBXN8 [Mapview hg19]  UBXN8 [Mapview hg38]
OMIM602155   
Gene and transcription
Genbank (Entrez)AK296600 AY302140 BC020694 BI462115 BI755534
RefSeq transcript (Entrez)NM_001282189 NM_001282199 NM_005671
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UBXN8
Cluster EST : UnigeneHs.153678 [ NCBI ]
CGAP (NCI)Hs.153678
Alternative Splicing GalleryENSG00000104691
Gene ExpressionUBXN8 [ NCBI-GEO ]   UBXN8 [ EBI - ARRAY_EXPRESS ]   UBXN8 [ SEEK ]   UBXN8 [ MEM ]
Gene Expression Viewer (FireBrowse)UBXN8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7993
GTEX Portal (Tissue expression)UBXN8
Human Protein AtlasENSG00000104691-UBXN8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO00124   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO00124  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO00124
Splice isoforms : SwissVarO00124
PhosPhoSitePlusO00124
Domaine pattern : Prosite (Expaxy)UBX (PS50033)   
Domains : Interpro (EBI)Ubiquitin-like_domsf    UBX_dom    UBXN8   
Domain families : Pfam (Sanger)UBX (PF00789)   
Domain families : Pfam (NCBI)pfam00789   
Conserved Domain (NCBI)UBXN8
DMDM Disease mutations7993
Blocks (Seattle)UBXN8
SuperfamilyO00124
Human Protein Atlas [tissue]ENSG00000104691-UBXN8 [tissue]
Peptide AtlasO00124
HPRD03692
IPIIPI00010353   IPI00220877   IPI00414693   
Protein Interaction databases
DIP (DOE-UCLA)O00124
IntAct (EBI)O00124
FunCoupENSG00000104691
BioGRIDUBXN8
STRING (EMBL)UBXN8
ZODIACUBXN8
Ontologies - Pathways
QuickGOO00124
Ontology : AmiGOprotein binding  nucleoplasm  nucleolus  endoplasmic reticulum  single fertilization  integral component of endoplasmic reticulum membrane  ubiquitin-dependent ERAD pathway  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleolus  endoplasmic reticulum  single fertilization  integral component of endoplasmic reticulum membrane  ubiquitin-dependent ERAD pathway  
NDEx NetworkUBXN8
Atlas of Cancer Signalling NetworkUBXN8
Wikipedia pathwaysUBXN8
Orthology - Evolution
OrthoDB7993
GeneTree (enSembl)ENSG00000104691
Phylogenetic Trees/Animal Genes : TreeFamUBXN8
HOGENOMO00124
Homologs : HomoloGeneUBXN8
Homology/Alignments : Family Browser (UCSC)UBXN8
Gene fusions - Rearrangements
Fusion : QuiverUBXN8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUBXN8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UBXN8
dbVarUBXN8
ClinVarUBXN8
1000_GenomesUBXN8 
Exome Variant ServerUBXN8
ExAC (Exome Aggregation Consortium)ENSG00000104691
GNOMAD BrowserENSG00000104691
Varsome BrowserUBXN8
Genetic variants : HAPMAP7993
Genomic Variants (DGV)UBXN8 [DGVbeta]
DECIPHERUBXN8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUBXN8 
Mutations
ICGC Data PortalUBXN8 
TCGA Data PortalUBXN8 
Broad Tumor PortalUBXN8
OASIS PortalUBXN8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUBXN8  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUBXN8
Mutations and Diseases : HGMDUBXN8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UBXN8
DgiDB (Drug Gene Interaction Database)UBXN8
DoCM (Curated mutations)UBXN8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UBXN8 (select a term)
intoGenUBXN8
Cancer3DUBXN8(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602155   
Orphanet
DisGeNETUBXN8
MedgenUBXN8
Genetic Testing Registry UBXN8
NextProtO00124 [Medical]
TSGene7993
GENETestsUBXN8
Target ValidationUBXN8
Huge Navigator UBXN8 [HugePedia]
snp3D : Map Gene to Disease7993
BioCentury BCIQUBXN8
ClinGenUBXN8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7993
Chemical/Pharm GKB GenePA162408474
Clinical trialUBXN8
Miscellaneous
canSAR (ICR)UBXN8 (select the gene name)
DataMed IndexUBXN8
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUBXN8
EVEXUBXN8
GoPubMedUBXN8
iHOPUBXN8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:14 CEST 2019
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