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UFSP1 (UFM1 specific peptidase 1 (inactive))

Identity

Alias_namesUFM1-specific peptidase 1 (non-functional)
Alias_symbol (synonym)UFSP
Other alias
HGNC (Hugo) UFSP1
LocusID (NCBI) 402682
Atlas_Id 75462
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100888723 and ends at 100889718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UFSP1   33821
Cards
Entrez_Gene (NCBI)UFSP1  402682  UFM1 specific peptidase 1 (inactive)
AliasesUFSP
GeneCards (Weizmann)UFSP1
Ensembl hg19 (Hinxton)ENSG00000176125 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176125 [Gene_View]  ENSG00000176125 [Sequence]  chr7:100888723-100889718 [Contig_View]  UFSP1 [Vega]
ICGC DataPortalENSG00000176125
TCGA cBioPortalUFSP1
AceView (NCBI)UFSP1
Genatlas (Paris)UFSP1
WikiGenes402682
SOURCE (Princeton)UFSP1
Genetics Home Reference (NIH)UFSP1
Genomic and cartography
GoldenPath hg38 (UCSC)UFSP1  -     chr7:100888723-100889718 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UFSP1  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathUFSP1 - 7q22.1 [CytoView hg19]  UFSP1 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000176125
Mapping of homologs : NCBIUFSP1 [Mapview hg19]  UFSP1 [Mapview hg38]
OMIM611481   
Gene and transcription
Genbank (Entrez)AK292467 BC017456 BC067904 DB073745
RefSeq transcript (Entrez)NM_001015072
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UFSP1
Cluster EST : UnigeneHs.534845 [ NCBI ]
CGAP (NCI)Hs.534845
Alternative Splicing GalleryENSG00000176125
Gene ExpressionUFSP1 [ NCBI-GEO ]   UFSP1 [ EBI - ARRAY_EXPRESS ]   UFSP1 [ SEEK ]   UFSP1 [ MEM ]
Gene Expression Viewer (FireBrowse)UFSP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)402682
GTEX Portal (Tissue expression)UFSP1
Human Protein AtlasENSG00000176125-UFSP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVU6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVU6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVU6
Splice isoforms : SwissVarQ6NVU6
PhosPhoSitePlusQ6NVU6
Domains : Interpro (EBI)Peptidase_C78_UfSP1/2    UfSP1   
Domain families : Pfam (Sanger)Peptidase_C78 (PF07910)   
Domain families : Pfam (NCBI)pfam07910   
Conserved Domain (NCBI)UFSP1
DMDM Disease mutations402682
Blocks (Seattle)UFSP1
SuperfamilyQ6NVU6
Human Protein Atlas [tissue]ENSG00000176125-UFSP1 [tissue]
Peptide AtlasQ6NVU6
HPRD18630
IPIIPI00556211   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVU6
IntAct (EBI)Q6NVU6
FunCoupENSG00000176125
BioGRIDUFSP1
STRING (EMBL)UFSP1
ZODIACUFSP1
Ontologies - Pathways
QuickGOQ6NVU6
Ontology : AmiGOmolecular_function  biological_process  
Ontology : EGO-EBImolecular_function  biological_process  
NDEx NetworkUFSP1
Atlas of Cancer Signalling NetworkUFSP1
Wikipedia pathwaysUFSP1
Orthology - Evolution
OrthoDB402682
GeneTree (enSembl)ENSG00000176125
Phylogenetic Trees/Animal Genes : TreeFamUFSP1
HOGENOMQ6NVU6
Homologs : HomoloGeneUFSP1
Homology/Alignments : Family Browser (UCSC)UFSP1
Gene fusions - Rearrangements
Fusion : QuiverUFSP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUFSP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UFSP1
dbVarUFSP1
ClinVarUFSP1
1000_GenomesUFSP1 
Exome Variant ServerUFSP1
ExAC (Exome Aggregation Consortium)ENSG00000176125
GNOMAD BrowserENSG00000176125
Varsome BrowserUFSP1
Genetic variants : HAPMAP402682
Genomic Variants (DGV)UFSP1 [DGVbeta]
DECIPHERUFSP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUFSP1 
Mutations
ICGC Data PortalUFSP1 
TCGA Data PortalUFSP1 
Broad Tumor PortalUFSP1
OASIS PortalUFSP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUFSP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUFSP1
Mutations and Diseases : HGMDUFSP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch UFSP1
DgiDB (Drug Gene Interaction Database)UFSP1
DoCM (Curated mutations)UFSP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UFSP1 (select a term)
intoGenUFSP1
Cancer3DUFSP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611481   
Orphanet
DisGeNETUFSP1
MedgenUFSP1
Genetic Testing Registry UFSP1
NextProtQ6NVU6 [Medical]
TSGene402682
GENETestsUFSP1
Target ValidationUFSP1
Huge Navigator UFSP1 [HugePedia]
snp3D : Map Gene to Disease402682
BioCentury BCIQUFSP1
ClinGenUFSP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD402682
Chemical/Pharm GKB GenePA162408522
Clinical trialUFSP1
Miscellaneous
canSAR (ICR)UFSP1 (select the gene name)
DataMed IndexUFSP1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUFSP1
EVEXUFSP1
GoPubMedUFSP1
iHOPUFSP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:15 CEST 2019
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