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UGT1A6 (UDP glucuronosyltransferase 1 family, polypeptide A6)

Identity

Other namesGNT1
HLUGP
HLUGP1
UDPGT
UDPGT 1-6
UGT1
UGT1A6S
UGT1F
HGNC (Hugo) UGT1A6
LocusID (NCBI) 54578
Location 2q37.1
Location_base_pair Starts at 234601512 and ends at 234681951 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)UGT1A6   12538
Entrez_Gene (NCBI)UGT1A6  54578  UDP glucuronosyltransferase 1 family, polypeptide A6
Cards
GeneCards (Weizmann)UGT1A6
Ensembl (Hinxton)ENSG00000167165 [Gene_View]  chr2:234601512-234681951 [Contig_View]  UGT1A6 [Vega]
AceView (NCBI)UGT1A6
Genatlas (Paris)UGT1A6
SOURCE (Stanford)NM_001072 NM_205862
Genomic and cartography
GoldenPath (UCSC)UGT1A6  -  2q37.1   chr2:234601512-234681951 +  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblUGT1A6 - 2q37.1 [CytoView]
Mapping of homologs : NCBIUGT1A6 [Mapview]
OMIM606431   
Gene and transcription
Genbank (Entrez)AY435141 BC011409 BC019861 BE463503 BM688740
RefSeq transcript (SRS)NM_001072 NM_205862
RefSeq transcript (Entrez)NM_001072 NM_205862
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NG_002601 NT_005120 NW_001838868 NW_004078009
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_002601 NT_005120 NW_001838868 NW_004078009
Consensus coding sequences : CCDS (NCBI)UGT1A6
Cluster EST : UnigeneHs.554822 [ SRS ] Hs.554822 [ NCBI ]
CGAP (NCI)Hs.554822
Alternative Splicing : Fast-db (Paris)GSHG0017294
Alternative Splicing GalleryENSG00000167165
Gene ExpressionUGT1A6 [ NCBI-GEO ]   UGT1A6 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP19224 (SRS) P19224 (Uniprot)
NextProtP19224
With graphics : InterProP19224
Splice isoforms : SwissVarP19224(Swissvar)
Domaine pattern : Prosite (SRS)UDPGT (PS00375)   
Domaine pattern : Prosite (Expaxy)UDPGT (PS00375)   
Domains : Interpro (SRS)UDP_glucos_trans   
Domains : Interpro (EBI)UDP_glucos_trans   
Related proteins : CluSTrP19224
Domain families : Pfam (SRS)UDPGT (PF00201)   
Domain families : Pfam (Sanger)UDPGT (PF00201)   
Domain families : Pfam (NCBI)pfam00201   
DMDM54578
Blocks (Seattle)P19224
Human Protein AtlasENSG00000167165
HPRD07071
IPIIPI00451965   IPI00410366   IPI00760952   IPI00892843   IPI00946165   
Protein Interaction databases
DIP (DOE-UCLA)P19224
IntAct (EBI)P19224
FunCoupENSG00000167165
REACTOMEUGT1A6
Protein Interaction Database54578
BioGRIDUGT1A6
InParanoidP19224
Interologous Interaction database P19224
IntegromeDBUGT1A6
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)UGT1A6
SNP (GeneSNP Utah)UGT1A6
SNP : HGBaseUGT1A6
Genetic variants : HAPMAPUGT1A6
Somatic Mutations in Cancer : COSMICUGT1A6 
CONAN: Copy Number AnalysisUGT1A6 
Mutations and Diseases : HGMDUGT1A6
OMIM606431   
GENETests606431   
Disease Genetic AssociationUGT1A6
Huge Navigator UGT1A6 [HugePedia]  UGT1A6 [HugeCancerGEM]
Genomic VariantsUGT1A6  UGT1A6 [DGVbeta]
snp3D : Map Gene to Disease54578
General knowledge
Homologs : HomoloGeneUGT1A6
Homology/Alignments : Family Browser (UCSC)UGT1A6
Phylogenetic Trees/Animal Genes : TreeFamUGT1A6
Catalytic activity : Enzyme2.4.1.17 [ Enzyme-Expasy ]   2.4.1.17 [ Enzyme-SRS ]   2.4.1.17 [ IntEnz-EBI ]   2.4.1.17 [ BRENDA ]   2.4.1.17 [ KEGG ]   
Chemical/Protein Interactions : CTD54578
Chemical/Pharm GKB GenePA37181
Clinical trialUGT1A6
Cancer Resource (Charite)ENSG00000167165
Ontology : AmiGOretinoic acid binding  endoplasmic reticulum membrane  xenobiotic metabolic process  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  integral to membrane  enzyme binding  protein homodimerization activity  intracellular membrane-bounded organelle  small molecule metabolic process  protein heterodimerization activity  
Ontology : EGO-EBIretinoic acid binding  endoplasmic reticulum membrane  xenobiotic metabolic process  xenobiotic metabolic process  metabolic process  glucuronosyltransferase activity  integral to membrane  enzyme binding  protein homodimerization activity  intracellular membrane-bounded organelle  small molecule metabolic process  protein heterodimerization activity  
Other databases
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
PubGeneUGT1A6
iHOPUGT1A6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:18:50 CEST 2013
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