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UMAD1 (UBAP1-MVB12-associated (UMA) domain containing 1)

Identity

Alias (NCBI)RPA3-AS1
RPA3OS
HGNC (Hugo) UMAD1
HGNC Previous nameRPA3-AS1
 RPA3OS
HGNC Previous nameRPA3 antisense RNA 1
 RPA3 opposite strand
LocusID (NCBI) 729852
Atlas_Id 75479
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 7640636 and ends at 7879220 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)UMAD1   48955
Cards
Entrez_Gene (NCBI)UMAD1  729852  UBAP1-MVB12-associated (UMA) domain containing 1
AliasesRPA3-AS1; RPA3OS
GeneCards (Weizmann)UMAD1
Ensembl hg19 (Hinxton)ENSG00000219545 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219545 [Gene_View]  ENSG00000219545 [Sequence]  chr7:7640636-7879220 [Contig_View]  UMAD1 [Vega]
ICGC DataPortalENSG00000219545
TCGA cBioPortalUMAD1
AceView (NCBI)UMAD1
Genatlas (Paris)UMAD1
WikiGenes729852
SOURCE (Princeton)UMAD1
Genetics Home Reference (NIH)UMAD1
Genomic and cartography
GoldenPath hg38 (UCSC)UMAD1  -     chr7:7640636-7879220 +  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)UMAD1  -     7p21.3   [Description]    (hg19-Feb_2009)
GoldenPathUMAD1 - 7p21.3 [CytoView hg19]  UMAD1 - 7p21.3 [CytoView hg38]
ImmunoBaseENSG00000219545
genome Data Viewer NCBIUMAD1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI565121 AK027125 AK295253 DA576342 DA678734
RefSeq transcript (Entrez)NM_001302348 NM_001302349 NM_001302350
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)UMAD1
Alternative Splicing GalleryENSG00000219545
Gene ExpressionUMAD1 [ NCBI-GEO ]   UMAD1 [ EBI - ARRAY_EXPRESS ]   UMAD1 [ SEEK ]   UMAD1 [ MEM ]
Gene Expression Viewer (FireBrowse)UMAD1 [ Firebrowse - Broad ]
GenevisibleExpression of UMAD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729852
GTEX Portal (Tissue expression)UMAD1
Human Protein AtlasENSG00000219545-UMAD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9J7I0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9J7I0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9J7I0
Splice isoforms : SwissVarC9J7I0
PhosPhoSitePlusC9J7I0
Domaine pattern : Prosite (Expaxy)UMA (PS51497)   
Domains : Interpro (EBI)UMA   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)UMAD1
DMDM Disease mutations729852
Blocks (Seattle)UMAD1
SuperfamilyC9J7I0
Human Protein Atlas [tissue]ENSG00000219545-UMAD1 [tissue]
Peptide AtlasC9J7I0
IPIIPI00401151   
Protein Interaction databases
DIP (DOE-UCLA)C9J7I0
IntAct (EBI)C9J7I0
FunCoupENSG00000219545
BioGRIDUMAD1
STRING (EMBL)UMAD1
ZODIACUMAD1
Ontologies - Pathways
QuickGOC9J7I0
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkUMAD1
Atlas of Cancer Signalling NetworkUMAD1
Wikipedia pathwaysUMAD1
Orthology - Evolution
OrthoDB729852
GeneTree (enSembl)ENSG00000219545
Phylogenetic Trees/Animal Genes : TreeFamUMAD1
HOGENOMC9J7I0
Homologs : HomoloGeneUMAD1
Homology/Alignments : Family Browser (UCSC)UMAD1
Gene fusions - Rearrangements
Fusion : QuiverUMAD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUMAD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)UMAD1
dbVarUMAD1
ClinVarUMAD1
1000_GenomesUMAD1 
Exome Variant ServerUMAD1
GNOMAD BrowserENSG00000219545
Varsome BrowserUMAD1
Genetic variants : HAPMAP729852
Genomic Variants (DGV)UMAD1 [DGVbeta]
DECIPHERUMAD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUMAD1 
Mutations
ICGC Data PortalUMAD1 
TCGA Data PortalUMAD1 
Broad Tumor PortalUMAD1
OASIS PortalUMAD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUMAD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUMAD1
Mutations and Diseases : HGMDUMAD1
BioMutasearch UMAD1
DgiDB (Drug Gene Interaction Database)UMAD1
DoCM (Curated mutations)UMAD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)UMAD1 (select a term)
intoGenUMAD1
Cancer3DUMAD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUMAD1
MedgenUMAD1
Genetic Testing Registry UMAD1
NextProtC9J7I0 [Medical]
TSGene729852
GENETestsUMAD1
Target ValidationUMAD1
Huge Navigator UMAD1 [HugePedia]
snp3D : Map Gene to Disease729852
BioCentury BCIQUMAD1
ClinGenUMAD1
Clinical trials, drugs, therapy
Protein Interactions : CTD729852
Pharm GKB GenePA166123751
Clinical trialUMAD1
Miscellaneous
canSAR (ICR)UMAD1 (select the gene name)
HarmonizomeUMAD1
DataMed IndexUMAD1
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUMAD1
EVEXUMAD1
GoPubMedUMAD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:34:52 CEST 2020

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