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URAD (ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase)

Identity

Alias_namesPRHOXNB
parahox cluster neighbor
Other alias
HGNC (Hugo) URAD
LocusID (NCBI) 646625
Atlas_Id 75509
Location 13q12.2  [Link to chromosome band 13q12]
Location_base_pair Starts at 27978106 and ends at 27988637 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)URAD   17785
Cards
Entrez_Gene (NCBI)URAD  646625  ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase
AliasesPRHOXNB
GeneCards (Weizmann)URAD
Ensembl hg19 (Hinxton)ENSG00000183463 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183463 [Gene_View]  ENSG00000183463 [Sequence]  chr13:27978106-27988637 [Contig_View]  URAD [Vega]
ICGC DataPortalENSG00000183463
TCGA cBioPortalURAD
AceView (NCBI)URAD
Genatlas (Paris)URAD
WikiGenes646625
SOURCE (Princeton)URAD
Genetics Home Reference (NIH)URAD
Genomic and cartography
GoldenPath hg38 (UCSC)URAD  -     chr13:27978106-27988637 -  13q12.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)URAD  -     13q12.2   [Description]    (hg19-Feb_2009)
GoldenPathURAD - 13q12.2 [CytoView hg19]  URAD - 13q12.2 [CytoView hg38]
ImmunoBaseENSG00000183463
Mapping of homologs : NCBIURAD [Mapview hg19]  URAD [Mapview hg38]
OMIM615804   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001105577
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)URAD
Cluster EST : UnigeneHs.705356 [ NCBI ]
CGAP (NCI)Hs.705356
Alternative Splicing GalleryENSG00000183463
Gene ExpressionURAD [ NCBI-GEO ]   URAD [ EBI - ARRAY_EXPRESS ]   URAD [ SEEK ]   URAD [ MEM ]
Gene Expression Viewer (FireBrowse)URAD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646625
GTEX Portal (Tissue expression)URAD
Human Protein AtlasENSG00000183463-URAD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGE7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGE7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGE7
Splice isoforms : SwissVarA6NGE7
Catalytic activity : Enzyme4.1.1.97 [ Enzyme-Expasy ]   4.1.1.974.1.1.97 [ IntEnz-EBI ]   4.1.1.97 [ BRENDA ]   4.1.1.97 [ KEGG ]   
PhosPhoSitePlusA6NGE7
Domains : Interpro (EBI)OHCU_decarboxylase    OHCU_decarboxylase-1    OHCU_decarboxylase_sf   
Domain families : Pfam (Sanger)OHCU_decarbox (PF09349)   
Domain families : Pfam (NCBI)pfam09349   
Conserved Domain (NCBI)URAD
DMDM Disease mutations646625
Blocks (Seattle)URAD
SuperfamilyA6NGE7
Human Protein Atlas [tissue]ENSG00000183463-URAD [tissue]
Peptide AtlasA6NGE7
IPIIPI00161055   
Protein Interaction databases
DIP (DOE-UCLA)A6NGE7
IntAct (EBI)A6NGE7
FunCoupENSG00000183463
BioGRIDURAD
STRING (EMBL)URAD
ZODIACURAD
Ontologies - Pathways
QuickGOA6NGE7
Ontology : AmiGOcellular_component  peroxisome  purine nucleobase metabolic process  biological_process  carboxy-lyase activity  carboxy-lyase activity  allantoin biosynthetic process  urate catabolic process  
Ontology : EGO-EBIcellular_component  peroxisome  purine nucleobase metabolic process  biological_process  carboxy-lyase activity  carboxy-lyase activity  allantoin biosynthetic process  urate catabolic process  
NDEx NetworkURAD
Atlas of Cancer Signalling NetworkURAD
Wikipedia pathwaysURAD
Orthology - Evolution
OrthoDB646625
GeneTree (enSembl)ENSG00000183463
Phylogenetic Trees/Animal Genes : TreeFamURAD
HOGENOMA6NGE7
Homologs : HomoloGeneURAD
Homology/Alignments : Family Browser (UCSC)URAD
Gene fusions - Rearrangements
Fusion : QuiverURAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerURAD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)URAD
dbVarURAD
ClinVarURAD
1000_GenomesURAD 
Exome Variant ServerURAD
ExAC (Exome Aggregation Consortium)ENSG00000183463
GNOMAD BrowserENSG00000183463
Varsome BrowserURAD
Genetic variants : HAPMAP646625
Genomic Variants (DGV)URAD [DGVbeta]
DECIPHERURAD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisURAD 
Mutations
ICGC Data PortalURAD 
TCGA Data PortalURAD 
Broad Tumor PortalURAD
OASIS PortalURAD [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDURAD
BioMutasearch URAD
DgiDB (Drug Gene Interaction Database)URAD
DoCM (Curated mutations)URAD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)URAD (select a term)
intoGenURAD
Cancer3DURAD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615804   
Orphanet
DisGeNETURAD
MedgenURAD
Genetic Testing Registry URAD
NextProtA6NGE7 [Medical]
TSGene646625
GENETestsURAD
Target ValidationURAD
Huge Navigator URAD [HugePedia]
snp3D : Map Gene to Disease646625
BioCentury BCIQURAD
ClinGenURAD
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646625
Chemical/Pharm GKB GenePA142671135
Clinical trialURAD
Miscellaneous
canSAR (ICR)URAD (select the gene name)
DataMed IndexURAD
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineURAD
EVEXURAD
GoPubMedURAD
iHOPURAD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:22 CEST 2019

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