Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

USP17L23 (ubiquitin specific peptidase 17 like family member 23)

Identity

Other alias-
HGNC (Hugo) USP17L23
LocusID (NCBI) 101241878
Atlas_Id 57512
Location 4p16.1  [Link to chromosome band 4p16]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)USP17L23   44451
Cards
Entrez_Gene (NCBI)USP17L23  101241878  ubiquitin specific peptidase 17 like family member 23
Aliases
GeneCards (Weizmann)USP17L23
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  USP17L23 [Vega]
TCGA cBioPortalUSP17L23
AceView (NCBI)USP17L23
Genatlas (Paris)USP17L23
WikiGenes101241878
SOURCE (Princeton)USP17L23
Genetics Home Reference (NIH)USP17L23
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L23  -  
GoldenPath hg19 (UCSC)USP17L23  -  
GoldenPathUSP17L23 - [CytoView hg19]  USP17L23 - [CytoView hg38]
Mapping of homologs : NCBIUSP17L23 [Mapview hg19]  USP17L23 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L23
Gene ExpressionUSP17L23 [ NCBI-GEO ]   USP17L23 [ EBI - ARRAY_EXPRESS ]   USP17L23 [ SEEK ]   USP17L23 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L23 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)101241878
GTEX Portal (Tissue expression)USP17L23
Protein : pattern, domain, 3D structure
UniProt/SwissProtD6RBM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtD6RBM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProD6RBM5
Splice isoforms : SwissVarD6RBM5
PhosPhoSitePlusD6RBM5
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_3 (PS50235)   
Domains : Interpro (EBI)Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)UCH (PF00443)   
Domain families : Pfam (NCBI)pfam00443   
Conserved Domain (NCBI)USP17L23
DMDM Disease mutations101241878
Blocks (Seattle)USP17L23
SuperfamilyD6RBM5
Peptide AtlasD6RBM5
Protein Interaction databases
DIP (DOE-UCLA)D6RBM5
IntAct (EBI)D6RBM5
BioGRIDUSP17L23
STRING (EMBL)USP17L23
ZODIACUSP17L23
Ontologies - Pathways
QuickGOD6RBM5
Ontology : AmiGOcysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  regulation of apoptotic process  
Ontology : EGO-EBIcysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  nucleus  endoplasmic reticulum  ubiquitin-dependent protein catabolic process  protein deubiquitination  regulation of apoptotic process  
NDEx NetworkUSP17L23
Atlas of Cancer Signalling NetworkUSP17L23
Wikipedia pathwaysUSP17L23
Orthology - Evolution
OrthoDB101241878
Phylogenetic Trees/Animal Genes : TreeFamUSP17L23
HOGENOMD6RBM5
Homologs : HomoloGeneUSP17L23
Homology/Alignments : Family Browser (UCSC)USP17L23
Gene fusions - Rearrangements
Fusion : QuiverUSP17L23
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L23 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L23
dbVarUSP17L23
ClinVarUSP17L23
1000_GenomesUSP17L23 
Exome Variant ServerUSP17L23
Varsome BrowserUSP17L23
Genetic variants : HAPMAP101241878
Genomic Variants (DGV)USP17L23 [DGVbeta]
DECIPHERUSP17L23 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L23 
Mutations
ICGC Data PortalUSP17L23 
TCGA Data PortalUSP17L23 
Broad Tumor PortalUSP17L23
OASIS PortalUSP17L23 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L23  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP17L23
Mutations and Diseases : HGMDUSP17L23
BioMutasearch USP17L23
DgiDB (Drug Gene Interaction Database)USP17L23
DoCM (Curated mutations)USP17L23 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L23 (select a term)
intoGenUSP17L23
Cancer3DUSP17L23(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUSP17L23
MedgenUSP17L23
Genetic Testing Registry USP17L23
NextProtD6RBM5 [Medical]
TSGene101241878
GENETestsUSP17L23
Target ValidationUSP17L23
Huge Navigator USP17L23 [HugePedia]
snp3D : Map Gene to Disease101241878
BioCentury BCIQUSP17L23
ClinGenUSP17L23
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101241878
Chemical/Pharm GKB GenePA166049139
Clinical trialUSP17L23
Miscellaneous
canSAR (ICR)USP17L23 (select the gene name)
DataMed IndexUSP17L23
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L23
EVEXUSP17L23
GoPubMedUSP17L23
iHOPUSP17L23
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:14:32 CET 2019

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.