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USP17L24 (ubiquitin specific peptidase 17 like family member 24)

Identity

Other aliasUSP17L25
USP17L26
USP17L27
USP17L28
USP17L29
USP17L30
HGNC (Hugo) USP17L24
LocusID (NCBI) 728369
Atlas_Id 57557
Location 4p16.1  [Link to chromosome band 4p16]
Location_base_pair Starts at 9325165 and ends at 9326757 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP17L24   44453
Cards
Entrez_Gene (NCBI)USP17L24  728369  ubiquitin specific peptidase 17 like family member 24
AliasesUSP17L25; USP17L26; USP17L27; USP17L28; 
USP17L29; USP17L30
GeneCards (Weizmann)USP17L24
Ensembl hg19 (Hinxton)ENSG00000232264 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232264 [Gene_View]  ENSG00000232264 [Sequence]  chr4:9325165-9326757 [Contig_View]  USP17L24 [Vega]
ICGC DataPortalENSG00000232264
TCGA cBioPortalUSP17L24
AceView (NCBI)USP17L24
Genatlas (Paris)USP17L24
WikiGenes728369
SOURCE (Princeton)USP17L24
Genetics Home Reference (NIH)USP17L24
Genomic and cartography
GoldenPath hg38 (UCSC)USP17L24  -     chr4:9325165-9326757 +  4p16.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP17L24  -     4p16.1   [Description]    (hg19-Feb_2009)
GoldenPathUSP17L24 - 4p16.1 [CytoView hg19]  USP17L24 - 4p16.1 [CytoView hg38]
ImmunoBaseENSG00000232264
Mapping of homologs : NCBIUSP17L24 [Mapview hg19]  USP17L24 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001242327
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP17L24
Cluster EST : UnigeneHs.553810 [ NCBI ]
CGAP (NCI)Hs.553810
Alternative Splicing GalleryENSG00000232264
Gene ExpressionUSP17L24 [ NCBI-GEO ]   USP17L24 [ EBI - ARRAY_EXPRESS ]   USP17L24 [ SEEK ]   USP17L24 [ MEM ]
Gene Expression Viewer (FireBrowse)USP17L24 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)728369
GTEX Portal (Tissue expression)USP17L24
Human Protein AtlasENSG00000232264-USP17L24 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0WX57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0WX57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0WX57
Splice isoforms : SwissVarQ0WX57
PhosPhoSitePlusQ0WX57
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)   
Domains : Interpro (EBI)HABP4_PAIRBP1-bd    Peptidase_C19_UCH    USP_CS    USP_dom   
Domain families : Pfam (Sanger)HABP4_PAI-RBP1 (PF04774)    UCH (PF00443)   
Domain families : Pfam (NCBI)pfam04774    pfam00443   
Conserved Domain (NCBI)USP17L24
DMDM Disease mutations728369
Blocks (Seattle)USP17L24
SuperfamilyQ0WX57
Human Protein Atlas [tissue]ENSG00000232264-USP17L24 [tissue]
Peptide AtlasQ0WX57
Protein Interaction databases
DIP (DOE-UCLA)Q0WX57
IntAct (EBI)Q0WX57
FunCoupENSG00000232264
BioGRIDUSP17L24
STRING (EMBL)USP17L24
ZODIACUSP17L24
Ontologies - Pathways
QuickGOQ0WX57
Ontology : AmiGORNA binding  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  hyaluronic acid binding  nucleus  nucleolus  endoplasmic reticulum  apoptotic process  protein deubiquitination  regulation of apoptotic process  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  positive regulation of epithelial cell apoptotic process  
Ontology : EGO-EBIRNA binding  cysteine-type endopeptidase activity  thiol-dependent ubiquitin-specific protease activity  thiol-dependent ubiquitin-specific protease activity  hyaluronic acid binding  nucleus  nucleolus  endoplasmic reticulum  apoptotic process  protein deubiquitination  regulation of apoptotic process  protein deubiquitination involved in ubiquitin-dependent protein catabolic process  positive regulation of epithelial cell apoptotic process  
NDEx NetworkUSP17L24
Atlas of Cancer Signalling NetworkUSP17L24
Wikipedia pathwaysUSP17L24
Orthology - Evolution
OrthoDB728369
GeneTree (enSembl)ENSG00000232264
Phylogenetic Trees/Animal Genes : TreeFamUSP17L24
HOGENOMQ0WX57
Homologs : HomoloGeneUSP17L24
Homology/Alignments : Family Browser (UCSC)USP17L24
Gene fusions - Rearrangements
Fusion : QuiverUSP17L24
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP17L24 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP17L24
dbVarUSP17L24
ClinVarUSP17L24
1000_GenomesUSP17L24 
Exome Variant ServerUSP17L24
ExAC (Exome Aggregation Consortium)ENSG00000232264
GNOMAD BrowserENSG00000232264
Varsome BrowserUSP17L24
Genetic variants : HAPMAP728369
Genomic Variants (DGV)USP17L24 [DGVbeta]
DECIPHERUSP17L24 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP17L24 
Mutations
ICGC Data PortalUSP17L24 
TCGA Data PortalUSP17L24 
Broad Tumor PortalUSP17L24
OASIS PortalUSP17L24 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP17L24  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP17L24
Mutations and Diseases : HGMDUSP17L24
BioMutasearch USP17L24
DgiDB (Drug Gene Interaction Database)USP17L24
DoCM (Curated mutations)USP17L24 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP17L24 (select a term)
intoGenUSP17L24
Cancer3DUSP17L24(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUSP17L24
MedgenUSP17L24
Genetic Testing Registry USP17L24
NextProtQ0WX57 [Medical]
TSGene728369
GENETestsUSP17L24
Target ValidationUSP17L24
Huge Navigator USP17L24 [HugePedia]
snp3D : Map Gene to Disease728369
BioCentury BCIQUSP17L24
ClinGenUSP17L24
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD728369
Chemical/Pharm GKB GenePA166049141
Clinical trialUSP17L24
Miscellaneous
canSAR (ICR)USP17L24 (select the gene name)
DataMed IndexUSP17L24
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP17L24
EVEXUSP17L24
GoPubMedUSP17L24
iHOPUSP17L24
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:14:32 CET 2019
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