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USP51 (ubiquitin specific peptidase 51)

Identity

Alias (NCBI)-
HGNC (Hugo) USP51
HGNC Previous nameubiquitin specific protease 51
LocusID (NCBI) 158880
Atlas_Id 57157
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55484616 and ends at 55489198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)USP51   23086
Cards
Entrez_Gene (NCBI)USP51  158880  ubiquitin specific peptidase 51
Aliases
GeneCards (Weizmann)USP51
Ensembl hg19 (Hinxton)ENSG00000247746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247746 [Gene_View]  ENSG00000247746 [Sequence]  chrX:55484616-55489198 [Contig_View]  USP51 [Vega]
ICGC DataPortalENSG00000247746
TCGA cBioPortalUSP51
AceView (NCBI)USP51
Genatlas (Paris)USP51
WikiGenes158880
SOURCE (Princeton)USP51
Genetics Home Reference (NIH)USP51
Genomic and cartography
GoldenPath hg38 (UCSC)USP51  -     chrX:55484616-55489198 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)USP51  -     Xp11.21   [Description]    (hg19-Feb_2009)
GoldenPathUSP51 - Xp11.21 [CytoView hg19]  USP51 - Xp11.21 [CytoView hg38]
ImmunoBaseENSG00000247746
genome Data Viewer NCBIUSP51 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI934832 AJ583823 BC035907 BC131541 BN000340
RefSeq transcript (Entrez)NM_201286
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)USP51
Alternative Splicing GalleryENSG00000247746
Gene ExpressionUSP51 [ NCBI-GEO ]   USP51 [ EBI - ARRAY_EXPRESS ]   USP51 [ SEEK ]   USP51 [ MEM ]
Gene Expression Viewer (FireBrowse)USP51 [ Firebrowse - Broad ]
GenevisibleExpression of USP51 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158880
GTEX Portal (Tissue expression)USP51
Human Protein AtlasENSG00000247746-USP51 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ70EK9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ70EK9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ70EK9
Splice isoforms : SwissVarQ70EK9
PhosPhoSitePlusQ70EK9
Domaine pattern : Prosite (Expaxy)USP_1 (PS00972)    USP_2 (PS00973)    USP_3 (PS50235)    ZF_UBP (PS50271)   
Domains : Interpro (EBI)Papain-like_cys_pep_sf    Peptidase_C19_UCH    USP_CS    USP_dom    Znf_RING/FYVE/PHD    Znf_UBP   
Domain families : Pfam (Sanger)UCH (PF00443)    zf-UBP (PF02148)   
Domain families : Pfam (NCBI)pfam00443    pfam02148   
Conserved Domain (NCBI)USP51
DMDM Disease mutations158880
Blocks (Seattle)USP51
SuperfamilyQ70EK9
Human Protein Atlas [tissue]ENSG00000247746-USP51 [tissue]
Peptide AtlasQ70EK9
IPIIPI00398738   
Protein Interaction databases
DIP (DOE-UCLA)Q70EK9
IntAct (EBI)Q70EK9
FunCoupENSG00000247746
BioGRIDUSP51
STRING (EMBL)USP51
ZODIACUSP51
Ontologies - Pathways
QuickGOQ70EK9
Ontology : AmiGOchromatin binding  thiol-dependent ubiquitin-specific protease activity  chromosome  DNA repair  ubiquitin-dependent protein catabolic process  zinc ion binding  regulation of cell cycle process  regulation of double-strand break repair via homologous recombination  histone deubiquitination  protein deubiquitination  histone binding  regulation of response to DNA damage stimulus  regulation of double-strand break repair via nonhomologous end joining  
Ontology : EGO-EBIchromatin binding  thiol-dependent ubiquitin-specific protease activity  chromosome  DNA repair  ubiquitin-dependent protein catabolic process  zinc ion binding  regulation of cell cycle process  regulation of double-strand break repair via homologous recombination  histone deubiquitination  protein deubiquitination  histone binding  regulation of response to DNA damage stimulus  regulation of double-strand break repair via nonhomologous end joining  
NDEx NetworkUSP51
Atlas of Cancer Signalling NetworkUSP51
Wikipedia pathwaysUSP51
Orthology - Evolution
OrthoDB158880
GeneTree (enSembl)ENSG00000247746
Phylogenetic Trees/Animal Genes : TreeFamUSP51
HOGENOMQ70EK9
Homologs : HomoloGeneUSP51
Homology/Alignments : Family Browser (UCSC)USP51
Gene fusions - Rearrangements
Fusion : QuiverUSP51
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerUSP51 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)USP51
dbVarUSP51
ClinVarUSP51
1000_GenomesUSP51 
Exome Variant ServerUSP51
GNOMAD BrowserENSG00000247746
Varsome BrowserUSP51
Genetic variants : HAPMAP158880
Genomic Variants (DGV)USP51 [DGVbeta]
DECIPHERUSP51 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisUSP51 
Mutations
ICGC Data PortalUSP51 
TCGA Data PortalUSP51 
Broad Tumor PortalUSP51
OASIS PortalUSP51 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICUSP51  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DUSP51
Mutations and Diseases : HGMDUSP51
BioMutasearch USP51
DgiDB (Drug Gene Interaction Database)USP51
DoCM (Curated mutations)USP51 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)USP51 (select a term)
intoGenUSP51
Cancer3DUSP51(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETUSP51
MedgenUSP51
Genetic Testing Registry USP51
NextProtQ70EK9 [Medical]
TSGene158880
GENETestsUSP51
Target ValidationUSP51
Huge Navigator USP51 [HugePedia]
snp3D : Map Gene to Disease158880
BioCentury BCIQUSP51
ClinGenUSP51
Clinical trials, drugs, therapy
Protein Interactions : CTD158880
Pharm GKB GenePA134888611
Clinical trialUSP51
Miscellaneous
canSAR (ICR)USP51 (select the gene name)
HarmonizomeUSP51
DataMed IndexUSP51
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineUSP51
EVEXUSP51
GoPubMedUSP51
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:42:01 CEST 2020
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