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VAMP8 (vesicle associated membrane protein 8)

Identity

Alias_symbol (synonym)EDB
Other aliasVAMP-8
HGNC (Hugo) VAMP8
LocusID (NCBI) 8673
Atlas_Id 54765
Location 2p11.2  [Link to chromosome band 2p11]
Location_base_pair Starts at 85577491 and ends at 85582033 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
VAMP8 (2p11.2) / SCAF1 (19q13.33)VAMP8 (2p11.2) / VAMP5 (2p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0202p11p11ID105110 TT_t0219p11q13ID105086


External links

Nomenclature
HGNC (Hugo)VAMP8   12647
Cards
Entrez_Gene (NCBI)VAMP8  8673  vesicle associated membrane protein 8
AliasesEDB; VAMP-8
GeneCards (Weizmann)VAMP8
Ensembl hg19 (Hinxton)ENSG00000118640 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118640 [Gene_View]  ENSG00000118640 [Sequence]  chr2:85577491-85582033 [Contig_View]  VAMP8 [Vega]
ICGC DataPortalENSG00000118640
TCGA cBioPortalVAMP8
AceView (NCBI)VAMP8
Genatlas (Paris)VAMP8
WikiGenes8673
SOURCE (Princeton)VAMP8
Genetics Home Reference (NIH)VAMP8
Genomic and cartography
GoldenPath hg38 (UCSC)VAMP8  -     chr2:85577491-85582033 +  2p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VAMP8  -     2p11.2   [Description]    (hg19-Feb_2009)
GoldenPathVAMP8 - 2p11.2 [CytoView hg19]  VAMP8 - 2p11.2 [CytoView hg38]
ImmunoBaseENSG00000118640
Mapping of homologs : NCBIVAMP8 [Mapview hg19]  VAMP8 [Mapview hg38]
OMIM603177   
Gene and transcription
Genbank (Entrez)AF053233 BC001634 BM702226 BQ227618 BT006700
RefSeq transcript (Entrez)NM_003761
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VAMP8
Alternative Splicing GalleryENSG00000118640
Gene ExpressionVAMP8 [ NCBI-GEO ]   VAMP8 [ EBI - ARRAY_EXPRESS ]   VAMP8 [ SEEK ]   VAMP8 [ MEM ]
Gene Expression Viewer (FireBrowse)VAMP8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8673
GTEX Portal (Tissue expression)VAMP8
Human Protein AtlasENSG00000118640-VAMP8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VAMP8
DMDM Disease mutations8673
Blocks (Seattle)VAMP8
Human Protein Atlas [tissue]ENSG00000118640-VAMP8 [tissue]
HPRD04415
IPIIPI00030911   IPI00917990   IPI00924720   
Protein Interaction databases
FunCoupENSG00000118640
BioGRIDVAMP8
STRING (EMBL)VAMP8
ZODIACVAMP8
Ontologies - Pathways
Huge Navigator VAMP8 [HugePedia]
snp3D : Map Gene to Disease8673
BioCentury BCIQVAMP8
ClinGenVAMP8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8673
Chemical/Pharm GKB GenePA37271
Clinical trialVAMP8
Miscellaneous
canSAR (ICR)VAMP8 (select the gene name)
DataMed IndexVAMP8
Probes
Litterature
PubMed81 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVAMP8
EVEXVAMP8
GoPubMedVAMP8
iHOPVAMP8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:05 CET 2020

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