VARS2 (valyl-tRNA synthetase 2, mitochondrial (putative))

Identity

Other names	MGC138259
	MGC142165
	VARS2L
	VARSL
HGNC	VARS2
Location	6p21.33
Location_base_pair	Starts at 30989961 and ends at 31002212 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	VARS2   21642
Entrez_Gene	VARS2  57176  valyl-tRNA synthetase 2, mitochondrial (putative)
	Cards
GeneCards	VARS2
Ensembl	VARS2 [Search_View]   ENSG00000137411 [Gene_View]
Genatlas	VARS2
GeneLynx	VARS2
eGenome	VARS2
euGene	57176
	Genomic and cartography
GoldenPath	VARS2  -  6p21.33   chr6:30989961-31002212 +  6p21.33   [Description]    (hg18-March_2006)
Ensembl	VARS2 - 6p21.33 [CytoView]
NCBI	Mapview
HomoloGene	VARS2
	Gene and transcription
Genbank	AB067472 [ ENTREZ ]
Genbank	AB209479 [ ENTREZ ]
Genbank	AK000511 [ ENTREZ ]
Genbank	AK025618 [ ENTREZ ]
Genbank	AK026063 [ ENTREZ ]
RefSeq	NM_020442 [ SRS ]    NM_020442 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NT_007592 [ SRS ]    NT_007592 [ ENTREZ ]
RefSeq	NT_113891 [ SRS ]    NT_113891 [ ENTREZ ]
RefSeq	NT_113893 [ SRS ]    NT_113893 [ ENTREZ ]
RefSeq	NW_001838980 [ SRS ]    NW_001838980 [ ENTREZ ]
RefSeq	NW_923073 [ SRS ]    NW_923073 [ ENTREZ ]
AceView	VARS2 AceView - NCBI
Unigene	Hs.597526 [ SRS ]    Hs.597526 [ NCBI ]     HS597526 [ spliceNest ]
	Protein : pattern, domain, 3D structure
SwissProt	Q5SQ95 [ SRS]    Q5SQ95 [ EXPASY ]     Q5SQ95 [ INTERPRO ]     Q5SQ95 [ UNIPROT ]
Prosite	PS00178 AA_TRNA_LIGASE_I [ SRS ]    PS00178 AA_TRNA_LIGASE_I [ Expasy ]
Interpro	IPR001412 aa-tRNA-synth_I_CS [ SRS ]    IPR001412 aa-tRNA-synth_I_CS [ EBI ]
Interpro	IPR002300 aa-tRNA-synth_Ia [ SRS ]    IPR002300 aa-tRNA-synth_Ia [ EBI ]
Interpro	IPR014729 Rossmann-like_a/b/a_fold [ SRS ]    IPR014729 Rossmann-like_a/b/a_fold [ EBI ]
Interpro	IPR013155 V/L/I-tRNA-synth_anticodon-bd [ SRS ]    IPR013155 V/L/I-tRNA-synth_anticodon-bd [ EBI ]
Interpro	IPR002303 Val-tRNA_synth_Ia [ SRS ]    IPR002303 Val-tRNA_synth_Ia [ EBI ]
CluSTr	Q5SQ95
Pfam	PF08264 Anticodon_1 [ SRS ]    PF08264 Anticodon_1 [ Sanger ]    pfam08264 [ NCBI-CDD ]
Pfam	PF00133 tRNA-synt_1 [ SRS ]    PF00133 tRNA-synt_1 [ Sanger ]    pfam00133 [ NCBI-CDD ]
Blocks	Q5SQ95
HPRD	11670
	Protein Interaction databases
DIP	Q5SQ95
IntAct	Q5SQ95
	Polymorphism : SNP, mutations, diseases
SNP	VARS2 [dbSNP-NCBI]
SNP	NM_020442 [SNP-NCI]
SNP	VARS2 [GeneSNPs - Utah]  VARS2] [HGBASE - SRS]
HAPMAP	VARS2 [HAPMAP]
HGMD	VARS2
	General knowledge
Family Browser	VARS2 [UCSC Family Browser]
SOURCE	NM_020442
SMD	Hs.597526
SAGE	Hs.597526
GO	nucleotide binding [Amigo]  nucleotide binding
GO	valine-tRNA ligase activity [Amigo]  valine-tRNA ligase activity
GO	ATP binding [Amigo]  ATP binding
GO	cytoplasm [Amigo]  cytoplasm
GO	mitochondrion [Amigo]  mitochondrion
GO	valyl-tRNA aminoacylation [Amigo]  valyl-tRNA aminoacylation
GO	ligase activity [Amigo]  ligase activity
PubGene	VARS2
TreeFam	VARS2
CTD	57176 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	VARS2 Related clones (RZPD - Berlin)
	PubMed
PubMed	4 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 15:07:16 2008