Atlas of Genetics and Cytogenetics in Oncology and Haematology

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VN1R1 (vomeronasal 1 receptor 1)

Identity

Alias_namesVNR19I1
vomeronasal olfactory receptor, (chromosome 19) subtype I, member 1
Alias_symbol (synonym)V1RL1
ZVNR1
ZVNH1
Other alias
HGNC (Hugo) VN1R1
LocusID (NCBI) 57191
Atlas_Id 75614
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57455174 and ends at 57456739 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF772 (19q13.43) / VN1R1 (19q13.43)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)VN1R1   13548
Cards
Entrez_Gene (NCBI)VN1R1  57191  vomeronasal 1 receptor 1
AliasesV1RL1; VNR19I1; ZVNH1; ZVNR1
GeneCards (Weizmann)VN1R1
Ensembl hg19 (Hinxton)ENSG00000178201 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178201 [Gene_View]  ENSG00000178201 [Sequence]  chr19:57455174-57456739 [Contig_View]  VN1R1 [Vega]
ICGC DataPortalENSG00000178201
TCGA cBioPortalVN1R1
AceView (NCBI)VN1R1
Genatlas (Paris)VN1R1
WikiGenes57191
SOURCE (Princeton)VN1R1
Genetics Home Reference (NIH)VN1R1
Genomic and cartography
GoldenPath hg38 (UCSC)VN1R1  -     chr19:57455174-57456739 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VN1R1  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathVN1R1 - 19q13.43 [CytoView hg19]  VN1R1 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000178201
Mapping of homologs : NCBIVN1R1 [Mapview hg19]  VN1R1 [Mapview hg38]
OMIM605234   
Gene and transcription
Genbank (Entrez)AF255342 AF302903 AK094452 BC095508 BG167434
RefSeq transcript (Entrez)NM_020633
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VN1R1
Cluster EST : UnigeneHs.736494 [ NCBI ]
CGAP (NCI)Hs.736494
Alternative Splicing GalleryENSG00000178201
Gene ExpressionVN1R1 [ NCBI-GEO ]   VN1R1 [ EBI - ARRAY_EXPRESS ]   VN1R1 [ SEEK ]   VN1R1 [ MEM ]
Gene Expression Viewer (FireBrowse)VN1R1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57191
GTEX Portal (Tissue expression)VN1R1
Human Protein AtlasENSG00000178201-VN1R1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9GZP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9GZP7
Splice isoforms : SwissVarQ9GZP7
PhosPhoSitePlusQ9GZP7
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    Vmron_rcpt_1   
Domain families : Pfam (Sanger)V1R (PF03402)   
Domain families : Pfam (NCBI)pfam03402   
Conserved Domain (NCBI)VN1R1
DMDM Disease mutations57191
Blocks (Seattle)VN1R1
SuperfamilyQ9GZP7
Human Protein Atlas [tissue]ENSG00000178201-VN1R1 [tissue]
Peptide AtlasQ9GZP7
HPRD05571
IPIIPI00009853   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZP7
IntAct (EBI)Q9GZP7
FunCoupENSG00000178201
BioGRIDVN1R1
STRING (EMBL)VN1R1
ZODIACVN1R1
Ontologies - Pathways
QuickGOQ9GZP7
Ontology : AmiGOpheromone binding  plasma membrane  G protein-coupled receptor signaling pathway  biological_process  integral component of membrane  pheromone receptor activity  response to pheromone  
Ontology : EGO-EBIpheromone binding  plasma membrane  G protein-coupled receptor signaling pathway  biological_process  integral component of membrane  pheromone receptor activity  response to pheromone  
NDEx NetworkVN1R1
Atlas of Cancer Signalling NetworkVN1R1
Wikipedia pathwaysVN1R1
Orthology - Evolution
OrthoDB57191
GeneTree (enSembl)ENSG00000178201
Phylogenetic Trees/Animal Genes : TreeFamVN1R1
HOGENOMQ9GZP7
Homologs : HomoloGeneVN1R1
Homology/Alignments : Family Browser (UCSC)VN1R1
Gene fusions - Rearrangements
Fusion : QuiverVN1R1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVN1R1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VN1R1
dbVarVN1R1
ClinVarVN1R1
1000_GenomesVN1R1 
Exome Variant ServerVN1R1
ExAC (Exome Aggregation Consortium)ENSG00000178201
GNOMAD BrowserENSG00000178201
Varsome BrowserVN1R1
Genetic variants : HAPMAP57191
Genomic Variants (DGV)VN1R1 [DGVbeta]
DECIPHERVN1R1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVN1R1 
Mutations
ICGC Data PortalVN1R1 
TCGA Data PortalVN1R1 
Broad Tumor PortalVN1R1
OASIS PortalVN1R1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVN1R1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVN1R1
Mutations and Diseases : HGMDVN1R1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VN1R1
DgiDB (Drug Gene Interaction Database)VN1R1
DoCM (Curated mutations)VN1R1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VN1R1 (select a term)
intoGenVN1R1
Cancer3DVN1R1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605234   
Orphanet
DisGeNETVN1R1
MedgenVN1R1
Genetic Testing Registry VN1R1
NextProtQ9GZP7 [Medical]
TSGene57191
GENETestsVN1R1
Target ValidationVN1R1
Huge Navigator VN1R1 [HugePedia]
snp3D : Map Gene to Disease57191
BioCentury BCIQVN1R1
ClinGenVN1R1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57191
Chemical/Pharm GKB GenePA134957891
Clinical trialVN1R1
Miscellaneous
canSAR (ICR)VN1R1 (select the gene name)
DataMed IndexVN1R1
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVN1R1
EVEXVN1R1
GoPubMedVN1R1
iHOPVN1R1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:35 CEST 2019
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