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VPS26C (VPS26 endosomal protein sorting factor C)

Identity

Other aliasDCRA
DSCR3
DSCRA
HGNC (Hugo) VPS26C
LocusID (NCBI) 10311
Atlas_Id 80336
Location 21q22.13  [Link to chromosome band 21q22]
Location_base_pair Starts at 37223425 and ends at 37267532 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VPS26C   3044
Cards
Entrez_Gene (NCBI)VPS26C  10311  VPS26 endosomal protein sorting factor C
AliasesDCRA; DSCR3; DSCRA
GeneCards (Weizmann)VPS26C
Ensembl hg19 (Hinxton)ENSG00000157538 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157538 [Gene_View]  ENSG00000157538 [Sequence]  chr21:37223425-37267532 [Contig_View]  VPS26C [Vega]
ICGC DataPortalENSG00000157538
TCGA cBioPortalVPS26C
AceView (NCBI)VPS26C
Genatlas (Paris)VPS26C
WikiGenes10311
SOURCE (Princeton)VPS26C
Genetics Home Reference (NIH)VPS26C
Genomic and cartography
GoldenPath hg38 (UCSC)VPS26C  -     chr21:37223425-37267532 -  21q22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS26C  -     21q22.13   [Description]    (hg19-Feb_2009)
GoldenPathVPS26C - 21q22.13 [CytoView hg19]  VPS26C - 21q22.13 [CytoView hg38]
ImmunoBaseENSG00000157538
Mapping of homologs : NCBIVPS26C [Mapview hg19]  VPS26C [Mapview hg38]
OMIM605298   
Gene and transcription
Genbank (Entrez)AJ001867 AK126461 AK299662 AK300024 AK303624
RefSeq transcript (Entrez)NM_001331018 NM_001331021 NM_001331022 NM_006052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS26C
Cluster EST : UnigeneHs.369488 [ NCBI ]
CGAP (NCI)Hs.369488
Alternative Splicing GalleryENSG00000157538
Gene ExpressionVPS26C [ NCBI-GEO ]   VPS26C [ EBI - ARRAY_EXPRESS ]   VPS26C [ SEEK ]   VPS26C [ MEM ]
Gene Expression Viewer (FireBrowse)VPS26C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10311
GTEX Portal (Tissue expression)VPS26C
Human Protein AtlasENSG00000157538-VPS26C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14972   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14972  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14972
Splice isoforms : SwissVarO14972
PhosPhoSitePlusO14972
Domains : Interpro (EBI)Arrestin_C    Ig_E-set    Vps26-related   
Domain families : Pfam (Sanger)Vps26 (PF03643)   
Domain families : Pfam (NCBI)pfam03643   
Conserved Domain (NCBI)VPS26C
DMDM Disease mutations10311
Blocks (Seattle)VPS26C
SuperfamilyO14972
Human Protein Atlas [tissue]ENSG00000157538-VPS26C [tissue]
Peptide AtlasO14972
IPIIPI00298946   IPI00922353   IPI00385046   IPI00789523   IPI00790030   IPI00790720   IPI00916796   
Protein Interaction databases
DIP (DOE-UCLA)O14972
IntAct (EBI)O14972
FunCoupENSG00000157538
BioGRIDVPS26C
STRING (EMBL)VPS26C
ZODIACVPS26C
Ontologies - Pathways
QuickGOO14972
Ontology : AmiGOmolecular_function  protein binding  nucleus  endosome  intracellular protein transport  biological_process  endocytic recycling  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBImolecular_function  protein binding  nucleus  endosome  intracellular protein transport  biological_process  endocytic recycling  retrograde transport, endosome to plasma membrane  
NDEx NetworkVPS26C
Atlas of Cancer Signalling NetworkVPS26C
Wikipedia pathwaysVPS26C
Orthology - Evolution
OrthoDB10311
GeneTree (enSembl)ENSG00000157538
Phylogenetic Trees/Animal Genes : TreeFamVPS26C
HOGENOMO14972
Homologs : HomoloGeneVPS26C
Homology/Alignments : Family Browser (UCSC)VPS26C
Gene fusions - Rearrangements
Fusion : QuiverVPS26C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS26C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS26C
dbVarVPS26C
ClinVarVPS26C
1000_GenomesVPS26C 
Exome Variant ServerVPS26C
ExAC (Exome Aggregation Consortium)ENSG00000157538
GNOMAD BrowserENSG00000157538
Varsome BrowserVPS26C
Genetic variants : HAPMAP10311
Genomic Variants (DGV)VPS26C [DGVbeta]
DECIPHERVPS26C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS26C 
Mutations
ICGC Data PortalVPS26C 
TCGA Data PortalVPS26C 
Broad Tumor PortalVPS26C
OASIS PortalVPS26C [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDVPS26C
BioMutasearch VPS26C
DgiDB (Drug Gene Interaction Database)VPS26C
DoCM (Curated mutations)VPS26C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS26C (select a term)
intoGenVPS26C
Cancer3DVPS26C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605298   
Orphanet
DisGeNETVPS26C
MedgenVPS26C
Genetic Testing Registry VPS26C
NextProtO14972 [Medical]
TSGene10311
GENETestsVPS26C
Target ValidationVPS26C
Huge Navigator VPS26C [HugePedia]
snp3D : Map Gene to Disease10311
BioCentury BCIQVPS26C
ClinGenVPS26C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10311
Chemical/Pharm GKB GenePA27496
Clinical trialVPS26C
Miscellaneous
canSAR (ICR)VPS26C (select the gene name)
DataMed IndexVPS26C
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS26C
EVEXVPS26C
GoPubMedVPS26C
iHOPVPS26C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:12:38 CEST 2019

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