VPS35L (VPS35 endosomal protein sorting factor like)

2018-11-01  

Identity

HGNC
VPS35L
LOCATION
16p12.3
LOCUSID
57020
ALIAS
C16orf62,EC97,RTSC3

Other Information

Locus ID:

NCBI: 57020
HGNC: 24641
Ensembl: ENSG00000103544

Variants:

dbSNP: 57020
ClinVar: 57020
TCGA: ENSG00000103544
COSMIC: VPS35L

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000103544ENST00000251143E7EWW0
ENSG00000103544ENST00000417362Q7Z3J2
ENSG00000103544ENST00000438132E7EWW0
ENSG00000103544ENST00000448695C9J7I2
ENSG00000103544ENST00000513947H3BVG8
ENSG00000103544ENST00000537186H0YFG6
ENSG00000103544ENST00000538552I3L1U5
ENSG00000103544ENST00000539322F6S1J4
ENSG00000103544ENST00000542027H3BUS7
ENSG00000103544ENST00000542263F5H7K1
ENSG00000103544ENST00000543152H3BV68
ENSG00000103544ENST00000544670H3BRV8
ENSG00000103544ENST00000563649H3BTI5
ENSG00000103544ENST00000567245H3BNX2

Pathways

PathwaySourceExternal ID
Immune SystemREACTOMER-HSA-168256
Innate Immune SystemREACTOMER-HSA-168249
Neutrophil degranulationREACTOMER-HSA-6798695

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
199131212009Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.85
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
288920792017Retriever is a multiprotein complex for retromer-independent endosomal cargo recycling.50
205322022010Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes.34
206280862010Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study.11

Citation

Dessen P

VPS35L (VPS35 endosomal protein sorting factor like)

Atlas Genet Cytogenet Oncol Haematol. 2018-11-01

Online version: http://atlasgeneticsoncology.org/gene/80534/vps35l