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VPS35L (VPS35 endosomal protein sorting factor like)

Identity

Other aliasC16orf62
HGNC (Hugo) VPS35L
LocusID (NCBI) 57020
Atlas_Id 80534
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 19555415 and ends at 19701163 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VPS35L   24641
Cards
Entrez_Gene (NCBI)VPS35L  57020  VPS35 endosomal protein sorting factor like
AliasesC16orf62
GeneCards (Weizmann)VPS35L
Ensembl hg19 (Hinxton)ENSG00000103544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103544 [Gene_View]  ENSG00000103544 [Sequence]  chr16:19555415-19701163 [Contig_View]  VPS35L [Vega]
ICGC DataPortalENSG00000103544
TCGA cBioPortalVPS35L
AceView (NCBI)VPS35L
Genatlas (Paris)VPS35L
WikiGenes57020
SOURCE (Princeton)VPS35L
Genetics Home Reference (NIH)VPS35L
Genomic and cartography
GoldenPath hg38 (UCSC)VPS35L  -     chr16:19555415-19701163 +  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VPS35L  -     16p12.3   [Description]    (hg19-Feb_2009)
GoldenPathVPS35L - 16p12.3 [CytoView hg19]  VPS35L - 16p12.3 [CytoView hg38]
ImmunoBaseENSG00000103544
Mapping of homologs : NCBIVPS35L [Mapview hg19]  VPS35L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF461052 AK024693 AK095078 AK290286 AK294885
RefSeq transcript (Entrez)NM_001300743 NM_001365293 NM_001365294 NM_001365295 NM_020314
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VPS35L
Alternative Splicing GalleryENSG00000103544
Gene ExpressionVPS35L [ NCBI-GEO ]   VPS35L [ EBI - ARRAY_EXPRESS ]   VPS35L [ SEEK ]   VPS35L [ MEM ]
Gene Expression Viewer (FireBrowse)VPS35L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57020
GTEX Portal (Tissue expression)VPS35L
Human Protein AtlasENSG00000103544-VPS35L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3J2
Splice isoforms : SwissVarQ7Z3J2
PhosPhoSitePlusQ7Z3J2
Domains : Interpro (EBI)VPS35L   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)VPS35L
DMDM Disease mutations57020
Blocks (Seattle)VPS35L
SuperfamilyQ7Z3J2
Human Protein Atlas [tissue]ENSG00000103544-VPS35L [tissue]
Peptide AtlasQ7Z3J2
IPIIPI01018160   IPI01018078   IPI00909793   IPI00872797   IPI01011009   IPI01009880   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3J2
IntAct (EBI)Q7Z3J2
FunCoupENSG00000103544
BioGRIDVPS35L
STRING (EMBL)VPS35L
ZODIACVPS35L
Ontologies - Pathways
QuickGOQ7Z3J2
Ontology : AmiGOprotein binding  cell  endosome  plasma membrane  Golgi to plasma membrane transport  protein transport  integral component of membrane  endocytic recycling  neutrophil degranulation  ficolin-1-rich granule membrane  retrograde transport, endosome to plasma membrane  
Ontology : EGO-EBIprotein binding  cell  endosome  plasma membrane  Golgi to plasma membrane transport  protein transport  integral component of membrane  endocytic recycling  neutrophil degranulation  ficolin-1-rich granule membrane  retrograde transport, endosome to plasma membrane  
NDEx NetworkVPS35L
Atlas of Cancer Signalling NetworkVPS35L
Wikipedia pathwaysVPS35L
Orthology - Evolution
OrthoDB57020
GeneTree (enSembl)ENSG00000103544
Phylogenetic Trees/Animal Genes : TreeFamVPS35L
HOGENOMQ7Z3J2
Homologs : HomoloGeneVPS35L
Homology/Alignments : Family Browser (UCSC)VPS35L
Gene fusions - Rearrangements
Fusion : QuiverVPS35L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVPS35L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VPS35L
dbVarVPS35L
ClinVarVPS35L
1000_GenomesVPS35L 
Exome Variant ServerVPS35L
ExAC (Exome Aggregation Consortium)ENSG00000103544
GNOMAD BrowserENSG00000103544
Varsome BrowserVPS35L
Genetic variants : HAPMAP57020
Genomic Variants (DGV)VPS35L [DGVbeta]
DECIPHERVPS35L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVPS35L 
Mutations
ICGC Data PortalVPS35L 
TCGA Data PortalVPS35L 
Broad Tumor PortalVPS35L
OASIS PortalVPS35L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVPS35L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVPS35L
Mutations and Diseases : HGMDVPS35L
BioMutasearch VPS35L
DgiDB (Drug Gene Interaction Database)VPS35L
DoCM (Curated mutations)VPS35L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VPS35L (select a term)
intoGenVPS35L
Cancer3DVPS35L(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVPS35L
MedgenVPS35L
Genetic Testing Registry VPS35L
NextProtQ7Z3J2 [Medical]
TSGene57020
GENETestsVPS35L
Target ValidationVPS35L
Huge Navigator VPS35L [HugePedia]
snp3D : Map Gene to Disease57020
BioCentury BCIQVPS35L
ClinGenVPS35L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57020
Chemical/Pharm GKB GenePA162378300
Clinical trialVPS35L
Miscellaneous
canSAR (ICR)VPS35L (select the gene name)
HarmonizomeVPS35L
DataMed IndexVPS35L
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVPS35L
EVEXVPS35L
GoPubMedVPS35L
iHOPVPS35L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 20:37:01 CET 2020

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