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VSIG10L2 (V-set and immunoglobulin domain containing 10 like 2)

Identity

Other alias-
HGNC (Hugo) VSIG10L2
LocusID (NCBI) 338667
Atlas_Id 78876
Location 11q24.2  [Link to chromosome band 11q24]
Location_base_pair Starts at 125946056 and ends at 125956319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VSIG10L2   27879
Cards
Entrez_Gene (NCBI)VSIG10L2  338667  V-set and immunoglobulin domain containing 10 like 2
Aliases
GeneCards (Weizmann)VSIG10L2
Ensembl hg19 (Hinxton)ENSG00000283703 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000283703 [Gene_View]  ENSG00000283703 [Sequence]  chr11:125946056-125956319 [Contig_View]  VSIG10L2 [Vega]
ICGC DataPortalENSG00000283703
TCGA cBioPortalVSIG10L2
AceView (NCBI)VSIG10L2
Genatlas (Paris)VSIG10L2
WikiGenes338667
SOURCE (Princeton)VSIG10L2
Genetics Home Reference (NIH)VSIG10L2
Genomic and cartography
GoldenPath hg38 (UCSC)VSIG10L2  -     chr11:125946056-125956319 +  11q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSIG10L2  -     11q24.2   [Description]    (hg19-Feb_2009)
GoldenPathVSIG10L2 - 11q24.2 [CytoView hg19]  VSIG10L2 - 11q24.2 [CytoView hg38]
ImmunoBaseENSG00000283703
Mapping of homologs : NCBIVSIG10L2 [Mapview hg19]  VSIG10L2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB231780 BC043578
RefSeq transcript (Entrez)NM_001365077
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSIG10L2
Alternative Splicing GalleryENSG00000283703
Gene ExpressionVSIG10L2 [ NCBI-GEO ]   VSIG10L2 [ EBI - ARRAY_EXPRESS ]   VSIG10L2 [ SEEK ]   VSIG10L2 [ MEM ]
Gene Expression Viewer (FireBrowse)VSIG10L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)338667
GTEX Portal (Tissue expression)VSIG10L2
Human Protein AtlasENSG00000283703-VSIG10L2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DP72   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DP72  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DP72
Splice isoforms : SwissVarP0DP72
PhosPhoSitePlusP0DP72
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)FN3_dom    FN3_sf    Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_sub    Ig_sub2   
Domain families : Pfam (Sanger)fn3 (PF00041)   
Domain families : Pfam (NCBI)pfam00041   
Domain families : Smart (EMBL)IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)VSIG10L2
DMDM Disease mutations338667
Blocks (Seattle)VSIG10L2
SuperfamilyP0DP72
Human Protein Atlas [tissue]ENSG00000283703-VSIG10L2 [tissue]
Peptide AtlasP0DP72
IPIIPI00888773   IPI00249970   
Protein Interaction databases
DIP (DOE-UCLA)P0DP72
IntAct (EBI)P0DP72
FunCoupENSG00000283703
BioGRIDVSIG10L2
STRING (EMBL)VSIG10L2
ZODIACVSIG10L2
Ontologies - Pathways
QuickGOP0DP72
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkVSIG10L2
Atlas of Cancer Signalling NetworkVSIG10L2
Wikipedia pathwaysVSIG10L2
Orthology - Evolution
OrthoDB338667
GeneTree (enSembl)ENSG00000283703
Phylogenetic Trees/Animal Genes : TreeFamVSIG10L2
HOGENOMP0DP72
Homologs : HomoloGeneVSIG10L2
Homology/Alignments : Family Browser (UCSC)VSIG10L2
Gene fusions - Rearrangements
Fusion : QuiverVSIG10L2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSIG10L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSIG10L2
dbVarVSIG10L2
ClinVarVSIG10L2
1000_GenomesVSIG10L2 
Exome Variant ServerVSIG10L2
ExAC (Exome Aggregation Consortium)ENSG00000283703
GNOMAD BrowserENSG00000283703
Varsome BrowserVSIG10L2
Genetic variants : HAPMAP338667
Genomic Variants (DGV)VSIG10L2 [DGVbeta]
DECIPHERVSIG10L2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSIG10L2 
Mutations
ICGC Data PortalVSIG10L2 
TCGA Data PortalVSIG10L2 
Broad Tumor PortalVSIG10L2
OASIS PortalVSIG10L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSIG10L2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSIG10L2
Mutations and Diseases : HGMDVSIG10L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSIG10L2
DgiDB (Drug Gene Interaction Database)VSIG10L2
DoCM (Curated mutations)VSIG10L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSIG10L2 (select a term)
intoGenVSIG10L2
Cancer3DVSIG10L2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVSIG10L2
MedgenVSIG10L2
Genetic Testing Registry VSIG10L2
NextProtP0DP72 [Medical]
TSGene338667
GENETestsVSIG10L2
Target ValidationVSIG10L2
Huge Navigator VSIG10L2 [HugePedia]
snp3D : Map Gene to Disease338667
BioCentury BCIQVSIG10L2
ClinGenVSIG10L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD338667
Clinical trialVSIG10L2
Miscellaneous
canSAR (ICR)VSIG10L2 (select the gene name)
HarmonizomeVSIG10L2
DataMed IndexVSIG10L2
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSIG10L2
EVEXVSIG10L2
GoPubMedVSIG10L2
iHOPVSIG10L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 20:37:04 CET 2020

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