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VSTM5 (V-set and transmembrane domain containing 5)

Identity

Alias_namesC11orf90
chromosome 11 open reading frame 90
Alias_symbol (synonym)LOC387804
Other alias
HGNC (Hugo) VSTM5
LocusID (NCBI) 387804
Atlas_Id 75654
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93820569 and ends at 93850502 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)VSTM5   34443
Cards
Entrez_Gene (NCBI)VSTM5  387804  V-set and transmembrane domain containing 5
AliasesC11orf90
GeneCards (Weizmann)VSTM5
Ensembl hg19 (Hinxton)ENSG00000214376 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214376 [Gene_View]  ENSG00000214376 [Sequence]  chr11:93820569-93850502 [Contig_View]  VSTM5 [Vega]
ICGC DataPortalENSG00000214376
TCGA cBioPortalVSTM5
AceView (NCBI)VSTM5
Genatlas (Paris)VSTM5
WikiGenes387804
SOURCE (Princeton)VSTM5
Genetics Home Reference (NIH)VSTM5
Genomic and cartography
GoldenPath hg38 (UCSC)VSTM5  -     chr11:93820569-93850502 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VSTM5  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathVSTM5 - 11q21 [CytoView hg19]  VSTM5 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000214376
Mapping of homologs : NCBIVSTM5 [Mapview hg19]  VSTM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DY654877 DY655155
RefSeq transcript (Entrez)NM_001144871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VSTM5
Alternative Splicing GalleryENSG00000214376
Gene ExpressionVSTM5 [ NCBI-GEO ]   VSTM5 [ EBI - ARRAY_EXPRESS ]   VSTM5 [ SEEK ]   VSTM5 [ MEM ]
Gene Expression Viewer (FireBrowse)VSTM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387804
GTEX Portal (Tissue expression)VSTM5
Human Protein AtlasENSG00000214376-VSTM5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MXK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MXK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MXK1
Splice isoforms : SwissVarA8MXK1
PhosPhoSitePlusA8MXK1
Domains : Interpro (EBI)Ig-like_dom_sf    Ig-like_fold    Ig_sub   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)IG (SM00409)  
Conserved Domain (NCBI)VSTM5
DMDM Disease mutations387804
Blocks (Seattle)VSTM5
SuperfamilyA8MXK1
Human Protein Atlas [tissue]ENSG00000214376-VSTM5 [tissue]
Peptide AtlasA8MXK1
IPIIPI00921478   IPI00917327   
Protein Interaction databases
DIP (DOE-UCLA)A8MXK1
IntAct (EBI)A8MXK1
FunCoupENSG00000214376
BioGRIDVSTM5
STRING (EMBL)VSTM5
ZODIACVSTM5
Ontologies - Pathways
QuickGOA8MXK1
Ontology : AmiGOplasma membrane  integral component of membrane  ventral spinal cord development  axon  dendrite  filopodium assembly  protein homooligomerization  positive regulation of excitatory synapse assembly  
Ontology : EGO-EBIplasma membrane  integral component of membrane  ventral spinal cord development  axon  dendrite  filopodium assembly  protein homooligomerization  positive regulation of excitatory synapse assembly  
NDEx NetworkVSTM5
Atlas of Cancer Signalling NetworkVSTM5
Wikipedia pathwaysVSTM5
Orthology - Evolution
OrthoDB387804
GeneTree (enSembl)ENSG00000214376
Phylogenetic Trees/Animal Genes : TreeFamVSTM5
HOGENOMA8MXK1
Homologs : HomoloGeneVSTM5
Homology/Alignments : Family Browser (UCSC)VSTM5
Gene fusions - Rearrangements
Fusion : QuiverVSTM5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVSTM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VSTM5
dbVarVSTM5
ClinVarVSTM5
1000_GenomesVSTM5 
Exome Variant ServerVSTM5
ExAC (Exome Aggregation Consortium)ENSG00000214376
GNOMAD BrowserENSG00000214376
Varsome BrowserVSTM5
Genetic variants : HAPMAP387804
Genomic Variants (DGV)VSTM5 [DGVbeta]
DECIPHERVSTM5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVSTM5 
Mutations
ICGC Data PortalVSTM5 
TCGA Data PortalVSTM5 
Broad Tumor PortalVSTM5
OASIS PortalVSTM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVSTM5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVSTM5
Mutations and Diseases : HGMDVSTM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch VSTM5
DgiDB (Drug Gene Interaction Database)VSTM5
DoCM (Curated mutations)VSTM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VSTM5 (select a term)
intoGenVSTM5
Cancer3DVSTM5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVSTM5
MedgenVSTM5
Genetic Testing Registry VSTM5
NextProtA8MXK1 [Medical]
TSGene387804
GENETestsVSTM5
Target ValidationVSTM5
Huge Navigator VSTM5 [HugePedia]
snp3D : Map Gene to Disease387804
BioCentury BCIQVSTM5
ClinGenVSTM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387804
Chemical/Pharm GKB GenePA164716741
Clinical trialVSTM5
Miscellaneous
canSAR (ICR)VSTM5 (select the gene name)
HarmonizomeVSTM5
DataMed IndexVSTM5
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVSTM5
EVEXVSTM5
GoPubMedVSTM5
iHOPVSTM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 20:37:05 CET 2020

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