Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

VXN (vexin)

Identity

Other aliasC8orf46
HGNC (Hugo) VXN
LocusID (NCBI) 254778
Atlas_Id 80650
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66493256 and ends at 66518524 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)VXN   28498
Cards
Entrez_Gene (NCBI)VXN  254778  vexin
AliasesC8orf46
GeneCards (Weizmann)VXN
Ensembl hg19 (Hinxton)ENSG00000169085 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169085 [Gene_View]  ENSG00000169085 [Sequence]  chr8:66493256-66518524 [Contig_View]  VXN [Vega]
ICGC DataPortalENSG00000169085
TCGA cBioPortalVXN
AceView (NCBI)VXN
Genatlas (Paris)VXN
WikiGenes254778
SOURCE (Princeton)VXN
Genetics Home Reference (NIH)VXN
Genomic and cartography
GoldenPath hg38 (UCSC)VXN  -     chr8:66493256-66518524 +  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)VXN  -     8q13.1   [Description]    (hg19-Feb_2009)
GoldenPathVXN - 8q13.1 [CytoView hg19]  VXN - 8q13.1 [CytoView hg38]
ImmunoBaseENSG00000169085
Mapping of homologs : NCBIVXN [Mapview hg19]  VXN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055047 AK096336 AK294261 AK308800 AK315486
RefSeq transcript (Entrez)NM_152765
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)VXN
Alternative Splicing GalleryENSG00000169085
Gene ExpressionVXN [ NCBI-GEO ]   VXN [ EBI - ARRAY_EXPRESS ]   VXN [ SEEK ]   VXN [ MEM ]
Gene Expression Viewer (FireBrowse)VXN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)254778
GTEX Portal (Tissue expression)VXN
Human Protein AtlasENSG00000169085-VXN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAG6
Splice isoforms : SwissVarQ8TAG6
PhosPhoSitePlusQ8TAG6
Domains : Interpro (EBI)Vexin    Vexin_dom   
Domain families : Pfam (Sanger)DUF4648 (PF15505)   
Domain families : Pfam (NCBI)pfam15505   
Conserved Domain (NCBI)VXN
DMDM Disease mutations254778
Blocks (Seattle)VXN
SuperfamilyQ8TAG6
Human Protein Atlas [tissue]ENSG00000169085-VXN [tissue]
Peptide AtlasQ8TAG6
IPIIPI00152055   IPI00908470   IPI00924452   IPI00980104   IPI01012029   IPI00976941   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAG6
IntAct (EBI)Q8TAG6
FunCoupENSG00000169085
BioGRIDVXN
STRING (EMBL)VXN
ZODIACVXN
Ontologies - Pathways
QuickGOQ8TAG6
Ontology : AmiGOnucleus  plasma membrane  neurogenesis  neuron differentiation  neuron differentiation  
Ontology : EGO-EBInucleus  plasma membrane  neurogenesis  neuron differentiation  neuron differentiation  
NDEx NetworkVXN
Atlas of Cancer Signalling NetworkVXN
Wikipedia pathwaysVXN
Orthology - Evolution
OrthoDB254778
GeneTree (enSembl)ENSG00000169085
Phylogenetic Trees/Animal Genes : TreeFamVXN
HOGENOMQ8TAG6
Homologs : HomoloGeneVXN
Homology/Alignments : Family Browser (UCSC)VXN
Gene fusions - Rearrangements
Fusion : QuiverVXN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerVXN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)VXN
dbVarVXN
ClinVarVXN
1000_GenomesVXN 
Exome Variant ServerVXN
ExAC (Exome Aggregation Consortium)ENSG00000169085
GNOMAD BrowserENSG00000169085
Varsome BrowserVXN
Genetic variants : HAPMAP254778
Genomic Variants (DGV)VXN [DGVbeta]
DECIPHERVXN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisVXN 
Mutations
ICGC Data PortalVXN 
TCGA Data PortalVXN 
Broad Tumor PortalVXN
OASIS PortalVXN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICVXN  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DVXN
Mutations and Diseases : HGMDVXN
BioMutasearch VXN
DgiDB (Drug Gene Interaction Database)VXN
DoCM (Curated mutations)VXN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)VXN (select a term)
intoGenVXN
Cancer3DVXN(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETVXN
MedgenVXN
Genetic Testing Registry VXN
NextProtQ8TAG6 [Medical]
TSGene254778
GENETestsVXN
Target ValidationVXN
Huge Navigator VXN [HugePedia]
snp3D : Map Gene to Disease254778
BioCentury BCIQVXN
ClinGenVXN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD254778
Chemical/Pharm GKB GenePA142672365
Clinical trialVXN
Miscellaneous
canSAR (ICR)VXN (select the gene name)
HarmonizomeVXN
DataMed IndexVXN
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineVXN
EVEXVXN
GoPubMedVXN
iHOPVXN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 20:37:09 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.