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WAKMAR2 (wound and keratinocyte migration associated lncRNA 2)

Identity

Alias_symbol (synonym)lnc-TNFAIP3
Other alias
HGNC (Hugo) WAKMAR2
LocusID (NCBI) 100130476
Atlas_Id 57055
Location 6q23.3  [Link to chromosome band 6q23]
Location_base_pair Starts at 137823670 and ends at 137868233 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)WAKMAR2   53754
Cards
Entrez_Gene (NCBI)WAKMAR2  100130476  wound and keratinocyte migration associated lncRNA 2
Aliaseslnc-TNFAIP3
GeneCards (Weizmann)WAKMAR2
Ensembl hg19 (Hinxton)ENSG00000237499 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237499 [Gene_View]  ENSG00000237499 [Sequence]  chr6:137823670-137868233 [Contig_View]  WAKMAR2 [Vega]
ICGC DataPortalENSG00000237499
TCGA cBioPortalWAKMAR2
AceView (NCBI)WAKMAR2
Genatlas (Paris)WAKMAR2
WikiGenes100130476
SOURCE (Princeton)WAKMAR2
Genetics Home Reference (NIH)WAKMAR2
Genomic and cartography
GoldenPath hg38 (UCSC)WAKMAR2  -     chr6:137823670-137868233 -  -   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WAKMAR2  -     -   [Description]    (hg19-Feb_2009)
GoldenPathWAKMAR2 - - [CytoView hg19]  WAKMAR2 - - [CytoView hg38]
ImmunoBaseENSG00000237499
Mapping of homologs : NCBIWAKMAR2 [Mapview hg19]  WAKMAR2 [Mapview hg38]
OMIM618508   
Gene and transcription
Genbank (Entrez)AK124173
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WAKMAR2
Cluster EST : UnigeneHs.598050 [ NCBI ]
CGAP (NCI)Hs.598050
Alternative Splicing GalleryENSG00000237499
Gene ExpressionWAKMAR2 [ NCBI-GEO ]   WAKMAR2 [ EBI - ARRAY_EXPRESS ]   WAKMAR2 [ SEEK ]   WAKMAR2 [ MEM ]
Gene Expression Viewer (FireBrowse)WAKMAR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100130476
GTEX Portal (Tissue expression)WAKMAR2
Human Protein AtlasENSG00000237499-WAKMAR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WAKMAR2
DMDM Disease mutations100130476
Blocks (Seattle)WAKMAR2
Human Protein Atlas [tissue]ENSG00000237499-WAKMAR2 [tissue]
IPIIPI00886730   
Protein Interaction databases
FunCoupENSG00000237499
BioGRIDWAKMAR2
STRING (EMBL)WAKMAR2
ZODIACWAKMAR2
Ontologies - Pathways
Huge Navigator WAKMAR2 [HugePedia]
snp3D : Map Gene to Disease100130476
BioCentury BCIQWAKMAR2
ClinGenWAKMAR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100130476
Clinical trialWAKMAR2
Miscellaneous
canSAR (ICR)WAKMAR2 (select the gene name)
DataMed IndexWAKMAR2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWAKMAR2
EVEXWAKMAR2
GoPubMedWAKMAR2
iHOPWAKMAR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:15:08 CET 2019

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