Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WARS2-IT1 (WARS2 intronic transcript 1)

Identity

Alias_namesWARS2 intronic transcript 1 (non-protein coding)
Other alias-
HGNC (Hugo) WARS2-IT1
LocusID (NCBI) 104472716
Atlas_Id 76780
Location 1p12  [Link to chromosome band 1p12]
Location_base_pair Starts at 119047405 and ends at 119063287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WARS2-IT1   41393
Cards
Entrez_Gene (NCBI)WARS2-IT1  104472716  WARS2 intronic transcript 1
Aliases
GeneCards (Weizmann)WARS2-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr1:119047405-119063287 [Contig_View]  WARS2-IT1 [Vega]
TCGA cBioPortalWARS2-IT1
AceView (NCBI)WARS2-IT1
Genatlas (Paris)WARS2-IT1
WikiGenes104472716
SOURCE (Princeton)WARS2-IT1
Genetics Home Reference (NIH)WARS2-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)WARS2-IT1  -     chr1:119047405-119063287 +  1p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WARS2-IT1  -     1p12   [Description]    (hg19-Feb_2009)
GoldenPathWARS2-IT1 - 1p12 [CytoView hg19]  WARS2-IT1 - 1p12 [CytoView hg38]
Mapping of homologs : NCBIWARS2-IT1 [Mapview hg19]  WARS2-IT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DB256282
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WARS2-IT1
Cluster EST : UnigeneHs.689536 [ NCBI ]
CGAP (NCI)Hs.689536
Gene ExpressionWARS2-IT1 [ NCBI-GEO ]   WARS2-IT1 [ EBI - ARRAY_EXPRESS ]   WARS2-IT1 [ SEEK ]   WARS2-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)WARS2-IT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)104472716
GTEX Portal (Tissue expression)WARS2-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WARS2-IT1
DMDM Disease mutations104472716
Blocks (Seattle)WARS2-IT1
Protein Interaction databases
BioGRIDWARS2-IT1
STRING (EMBL)WARS2-IT1
ZODIACWARS2-IT1
Ontologies - Pathways
Huge Navigator WARS2-IT1 [HugePedia]
snp3D : Map Gene to Disease104472716
BioCentury BCIQWARS2-IT1
ClinGenWARS2-IT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD104472716
Clinical trialWARS2-IT1
Miscellaneous
canSAR (ICR)WARS2-IT1 (select the gene name)
DataMed IndexWARS2-IT1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWARS2-IT1
EVEXWARS2-IT1
GoPubMedWARS2-IT1
iHOPWARS2-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:12:46 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.