| Nomenclature |
|---|
| HGNC (Hugo) | WASHC1 24361 |
| Cards |
|---|
| Entrez_Gene (NCBI) | WASHC1 100287171 WASH complex subunit 1 |
| Aliases | FAM39E; WASH; WASH1 |
| GeneCards (Weizmann) | WASHC1 |
| Ensembl hg19 (Hinxton) | ENSG00000181404 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000181404 [Gene_View] ENSG00000181404 [Sequence] chr9:14511-29739 [Contig_View] WASHC1 [Vega] |
| ICGC DataPortal | ENSG00000181404 |
| TCGA cBioPortal | WASHC1 |
| AceView (NCBI) | WASHC1 |
| Genatlas (Paris) | WASHC1 |
| WikiGenes | 100287171 |
| SOURCE (Princeton) | WASHC1 |
| Genetics Home Reference (NIH) | WASHC1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | WASHC1 - chr9:14511-29739 - 9p24.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | WASHC1 - 9p24.3 [Description] (hg19-Feb_2009) |
| GoldenPath | WASHC1 - 9p24.3 [CytoView hg19] WASHC1 - 9p24.3 [CytoView hg38] |
| ImmunoBase | ENSG00000181404 |
| Mapping of homologs : NCBI | WASHC1 [Mapview hg19] WASHC1 [Mapview hg38] |
| OMIM | 613632 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK024448 AK024481 AK289708 AK309568 BC014406 |
| RefSeq transcript (Entrez) | NM_182905 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | WASHC1 |
| Cluster EST : Unigene | Hs.709408 [ NCBI ] |
| CGAP (NCI) | Hs.709408 |
| Alternative Splicing Gallery | ENSG00000181404 |
| Gene Expression | WASHC1 [ NCBI-GEO ] WASHC1 [ EBI - ARRAY_EXPRESS ]
WASHC1 [ SEEK ] WASHC1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | WASHC1 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 100287171 |
| GTEX Portal (Tissue expression) | WASHC1 |
| Human Protein Atlas | ENSG00000181404-WASHC1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | A8K0Z3 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | A8K0Z3 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | A8K0Z3 |
| Splice isoforms : SwissVar | A8K0Z3 |
| PhosPhoSitePlus | A8K0Z3 |
| Domains : Interpro (EBI) | WASH1 WASH1_WAHD |
| Domain families : Pfam (Sanger) | WASH_WAHD (PF11945) |
| Domain families : Pfam (NCBI) | pfam11945 |
| Conserved Domain (NCBI) | WASHC1 |
| DMDM Disease mutations | 100287171 |
| Blocks (Seattle) | WASHC1 |
| Superfamily | A8K0Z3 |
| Human Protein Atlas [tissue] | ENSG00000181404-WASHC1 [tissue] |
| Peptide Atlas | A8K0Z3 |
| IPI | IPI00954866 IPI01012444 IPI00017695 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | A8K0Z3 |
| IntAct (EBI) | A8K0Z3 |
| FunCoup | ENSG00000181404 |
| BioGRID | WASHC1 |
| STRING (EMBL) | WASHC1 |
| ZODIAC | WASHC1 |
| Ontologies - Pathways |
|---|
| QuickGO | A8K0Z3 |
| Ontology : AmiGO | exocyst actin binding protein binding early endosome early endosome late endosome autophagosome centriole cytosol exocytosis negative regulation of autophagy protein transport endosomal transport extracellular matrix disassembly positive regulation of cell migration positive regulation of pseudopodium assembly regulation of protein ubiquitination ubiquitin protein ligase binding early endosome membrane Arp2/3 complex-mediated actin nucleation Arp2/3 complex-mediated actin nucleation retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi alpha-tubulin binding intracellular membrane-bounded organelle negative regulation of phosphatidylinositol 3-kinase activity recycling endosome recycling endosome membrane WASH complex invadopodium retrograde transport, endosome to plasma membrane |
| Ontology : EGO-EBI | exocyst actin binding protein binding early endosome early endosome late endosome autophagosome centriole cytosol exocytosis negative regulation of autophagy protein transport endosomal transport extracellular matrix disassembly positive regulation of cell migration positive regulation of pseudopodium assembly regulation of protein ubiquitination ubiquitin protein ligase binding early endosome membrane Arp2/3 complex-mediated actin nucleation Arp2/3 complex-mediated actin nucleation retrograde transport, endosome to Golgi retrograde transport, endosome to Golgi alpha-tubulin binding intracellular membrane-bounded organelle negative regulation of phosphatidylinositol 3-kinase activity recycling endosome recycling endosome membrane WASH complex invadopodium retrograde transport, endosome to plasma membrane |
| NDEx Network | WASHC1 |
| Atlas of Cancer Signalling Network | WASHC1 |
| Wikipedia pathways | WASHC1 |
| Orthology - Evolution |
|---|
| OrthoDB | 100287171 |
| GeneTree (enSembl) | ENSG00000181404 |
| Phylogenetic Trees/Animal Genes : TreeFam | WASHC1 |
| HOGENOM | A8K0Z3 |
| Homologs : HomoloGene | WASHC1 |
| Homology/Alignments : Family Browser (UCSC) | WASHC1 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | WASHC1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | WASHC1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | WASHC1 |
| dbVar | WASHC1 |
| ClinVar | WASHC1 |
| 1000_Genomes | WASHC1 |
| Exome Variant Server | WASHC1 |
| ExAC (Exome Aggregation Consortium) | ENSG00000181404 |
| GNOMAD Browser | ENSG00000181404 |
| Varsome Browser | WASHC1 |
| Genetic variants : HAPMAP | 100287171 |
| Genomic Variants (DGV) | WASHC1 [DGVbeta] |
| DECIPHER | WASHC1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | WASHC1 |
| Mutations |
|---|
| ICGC Data Portal | WASHC1 |
| TCGA Data Portal | WASHC1 |
| Broad Tumor Portal | WASHC1 |
| OASIS Portal | WASHC1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | WASHC1 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | WASHC1 |
| Mutations and Diseases : HGMD | WASHC1 |
| BioMuta | search WASHC1 |
| DgiDB (Drug Gene Interaction Database) | WASHC1 |
| DoCM (Curated mutations) | WASHC1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | WASHC1 (select a term) |
| intoGen | WASHC1 |
| Cancer3D | WASHC1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 613632 |
| Orphanet | |
| DisGeNET | WASHC1 |
| Medgen | WASHC1 |
| Genetic Testing Registry | WASHC1
|
| NextProt | A8K0Z3 [Medical] |
| TSGene | 100287171 |
| GENETests | WASHC1 |
| Target Validation | WASHC1 |
| Huge Navigator |
WASHC1 [HugePedia] |
| snp3D : Map Gene to Disease | 100287171 |
| BioCentury BCIQ | WASHC1 |
| ClinGen | WASHC1 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 100287171 |
| Chemical/Pharm GKB Gene | PA162409121 |
| Clinical trial | WASHC1 |
| Miscellaneous |
|---|
| canSAR (ICR) | WASHC1 (select the gene name) |
| DataMed Index | WASHC1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 33 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | WASHC1 |
| EVEX | WASHC1 |
| GoPubMed | WASHC1 |
| iHOP | WASHC1 |
