Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

WDR26 (WD repeat domain 26)

Identity

Alias (NCBI)CDW2
GID7
MIP2
SKDEAS
HGNC (Hugo) WDR26
HGNC Alias symbFLJ21016
GID7
HGNC Alias nameGID complex subunit 7 homolog (S. cerevisiae)
LocusID (NCBI) 80232
Atlas_Id 53496
Location 1q42.11  [Link to chromosome band 1q42]
Location_base_pair Starts at 224385143 and ends at 224434299 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AEBP1 (7p13) / WDR26 (1q42.11)NCL (2q37.1) / WDR26 (1q42.11)TP53BP2 (1q41) / WDR26 (1q42.11)
WDR26 (1q42.11) / PLPP3 (1p32.2)WDR26 (1q42.11) / RPS14 (5q33.1)WDR26 (1q42.11) / WDR70 (5p13.2)
TP53BP2 1q41 / WDR26 1q42.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;1)(q41;q42) TP53BP2/WDR26

External links

Nomenclature
HGNC (Hugo)WDR26   21208
Cards
Entrez_Gene (NCBI)WDR26    WD repeat domain 26
AliasesCDW2; GID7; MIP2; SKDEAS
GeneCards (Weizmann)WDR26
Ensembl hg19 (Hinxton)ENSG00000162923 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162923 [Gene_View]  ENSG00000162923 [Sequence]  chr1:224385143-224434299 [Contig_View]  WDR26 [Vega]
ICGC DataPortalENSG00000162923
TCGA cBioPortalWDR26
AceView (NCBI)WDR26
Genatlas (Paris)WDR26
SOURCE (Princeton)WDR26
Genetics Home Reference (NIH)WDR26
Genomic and cartography
GoldenPath hg38 (UCSC)WDR26  -     chr1:224385143-224434299 -  1q42.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR26  -     1q42.11   [Description]    (hg19-Feb_2009)
GoldenPathWDR26 - 1q42.11 [CytoView hg19]  WDR26 - 1q42.11 [CytoView hg38]
ImmunoBaseENSG00000162923
genome Data Viewer NCBIWDR26 [Mapview hg19]  
OMIM617424   617616   
Gene and transcription
Genbank (Entrez)AB209887 AB586698 AF130049 AK023023 AK024669
RefSeq transcript (Entrez)NM_001115113 NM_001379403 NM_025160
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR26
Alternative Splicing GalleryENSG00000162923
Gene ExpressionWDR26 [ NCBI-GEO ]   WDR26 [ EBI - ARRAY_EXPRESS ]   WDR26 [ SEEK ]   WDR26 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR26 [ Firebrowse - Broad ]
GenevisibleExpression of WDR26 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80232
GTEX Portal (Tissue expression)WDR26
Human Protein AtlasENSG00000162923-WDR26 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H7D7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H7D7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H7D7
Splice isoforms : SwissVarQ9H7D7
PhosPhoSitePlusQ9H7D7
Domaine pattern : Prosite (Expaxy)CTLH (PS50897)    LISH (PS50896)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (EBI)CTLH_C    LisH    WD40/YVTN_repeat-like_dom_sf    WD40_repeat    WD40_repeat_dom    WD40_repeat_dom_sf   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)CTLH (SM00668)  WD40 (SM00320)  
Conserved Domain (NCBI)WDR26
Blocks (Seattle)WDR26
SuperfamilyQ9H7D7
Human Protein Atlas [tissue]ENSG00000162923-WDR26 [tissue]
Peptide AtlasQ9H7D7
HPRD18298
IPIIPI00414197   IPI00645819   IPI00646469   IPI00829602   IPI01009363   
Protein Interaction databases
DIP (DOE-UCLA)Q9H7D7
IntAct (EBI)Q9H7D7
BioGRIDWDR26
STRING (EMBL)WDR26
ZODIACWDR26
Ontologies - Pathways
QuickGOQ9H7D7
Ontology : AmiGOubiquitin ligase complex  protein binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  
Ontology : EGO-EBIubiquitin ligase complex  protein binding  nucleus  nucleoplasm  cytoplasm  mitochondrion  cytosol  
NDEx NetworkWDR26
Atlas of Cancer Signalling NetworkWDR26
Wikipedia pathwaysWDR26
Orthology - Evolution
OrthoDB80232
GeneTree (enSembl)ENSG00000162923
Phylogenetic Trees/Animal Genes : TreeFamWDR26
HOGENOMQ9H7D7
Homologs : HomoloGeneWDR26
Homology/Alignments : Family Browser (UCSC)WDR26
Gene fusions - Rearrangements
Fusion : MitelmanTP53BP2/WDR26 [1q41/1q42.11]  
Fusion PortalTP53BP2 1q41 WDR26 1q42.11 BRCA
Fusion : QuiverWDR26
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWDR26 [hg38]
dbVarWDR26
ClinVarWDR26
MonarchWDR26
1000_GenomesWDR26 
Exome Variant ServerWDR26
GNOMAD BrowserENSG00000162923
Varsome BrowserWDR26
Genomic Variants (DGV)WDR26 [DGVbeta]
DECIPHERWDR26 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWDR26 
Mutations
ICGC Data PortalWDR26 
TCGA Data PortalWDR26 
Broad Tumor PortalWDR26
OASIS PortalWDR26 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICWDR26  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DWDR26
Mutations and Diseases : HGMDWDR26
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WDR26
DgiDB (Drug Gene Interaction Database)WDR26
DoCM (Curated mutations)WDR26 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WDR26 (select a term)
intoGenWDR26
Cancer3DWDR26(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617424    617616   
Orphanet
DisGeNETWDR26
MedgenWDR26
Genetic Testing Registry WDR26
NextProtQ9H7D7 [Medical]
GENETestsWDR26
Target ValidationWDR26
Huge Navigator WDR26 [HugePedia]
ClinGenWDR26
Clinical trials, drugs, therapy
MyCancerGenomeWDR26
Protein Interactions : CTD
Pharm GKB GenePA134907873
PharosQ9H7D7
Clinical trialWDR26
Miscellaneous
canSAR (ICR)WDR26 (select the gene name)
HarmonizomeWDR26
DataMed IndexWDR26
Probes
Litterature
PubMed77 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXWDR26
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jan 1 18:44:19 CET 2021
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.