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WDR60 (WD repeat domain 60)

Identity

Alias_symbol (synonym)FLJ10300
FAP163
Other aliasSRPS6
SRTD8
HGNC (Hugo) WDR60
LocusID (NCBI) 55112
Atlas_Id 54778
Location 7q36.3  [Link to chromosome band 7q36]
Location_base_pair Starts at 158856578 and ends at 158946192 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AGK (7q34) / WDR60 (7q36.3)EVC (4p16.2) / WDR60 (7q36.3)RGS21 (1q31.2) / WDR60 (7q36.3)
WDR60 (7q36.3) / ARHGEF7 (13q34)WDR60 (7q36.3) / MYH9 (22q12.3)WDR60 (7q36.3) / RASAL2 (1q25.2)
WDR60 (7q36.3) / VIPR2 (7q36.3)WDR60 (7q36.3) / WDR60 (7q36.3)EVC 4p16.2 / WDR60 7q36.3
WDR60 7q36.3 / VIPR2 7q36.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 4 ]

Solid Tumors TT_t0407p16q36ID106448 TT_t0707q34q36ID107732 TT_t0707q36q36ID107758 TT_t0707q36q36ID107759


External links

Nomenclature
HGNC (Hugo)WDR60   21862
Cards
Entrez_Gene (NCBI)WDR60  55112  WD repeat domain 60
AliasesFAP163; SRPS6; SRTD8
GeneCards (Weizmann)WDR60
Ensembl hg19 (Hinxton)ENSG00000126870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000126870 [Gene_View]  ENSG00000126870 [Sequence]  chr7:158856578-158946192 [Contig_View]  WDR60 [Vega]
ICGC DataPortalENSG00000126870
TCGA cBioPortalWDR60
AceView (NCBI)WDR60
Genatlas (Paris)WDR60
WikiGenes55112
SOURCE (Princeton)WDR60
Genetics Home Reference (NIH)WDR60
Genomic and cartography
GoldenPath hg38 (UCSC)WDR60  -     chr7:158856578-158946192 +  7q36.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WDR60  -     7q36.3   [Description]    (hg19-Feb_2009)
GoldenPathWDR60 - 7q36.3 [CytoView hg19]  WDR60 - 7q36.3 [CytoView hg38]
ImmunoBaseENSG00000126870
Mapping of homologs : NCBIWDR60 [Mapview hg19]  WDR60 [Mapview hg38]
OMIM615462   615503   
Gene and transcription
Genbank (Entrez)AK001162 AK027228 AL137660 BC014491 BM718580
RefSeq transcript (Entrez)NM_001350914 NM_001350915 NM_001350916 NM_001350917 NM_001350918 NM_018051
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WDR60
Alternative Splicing GalleryENSG00000126870
Gene ExpressionWDR60 [ NCBI-GEO ]   WDR60 [ EBI - ARRAY_EXPRESS ]   WDR60 [ SEEK ]   WDR60 [ MEM ]
Gene Expression Viewer (FireBrowse)WDR60 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55112
GTEX Portal (Tissue expression)WDR60
Human Protein AtlasENSG00000126870-WDR60 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)WDR60
DMDM Disease mutations55112
Blocks (Seattle)WDR60
Human Protein Atlas [tissue]ENSG00000126870-WDR60 [tissue]
HPRD08545
IPIIPI00165454   IPI00465018   IPI00894339   IPI00894550   IPI00894157   
Protein Interaction databases
FunCoupENSG00000126870
BioGRIDWDR60
STRING (EMBL)WDR60
ZODIACWDR60
Ontologies - Pathways
Huge Navigator WDR60 [HugePedia]
snp3D : Map Gene to Disease55112
BioCentury BCIQWDR60
ClinGenWDR60
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55112
Chemical/Pharm GKB GenePA142670594
Clinical trialWDR60
Miscellaneous
canSAR (ICR)WDR60 (select the gene name)
DataMed IndexWDR60
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWDR60
EVEXWDR60
GoPubMedWDR60
iHOPWDR60
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:34 CET 2020

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