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WHAMMP3 (WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3)

Identity

Alias_namesWHDC1L1
WHAMML1
WAS protein homology region 2 domain containing 1-like 1
WAS protein homolog associated with actin, golgi membranes and microtubules-like 1
WAS protein homolog associated with actin, golgi membranes and microtubules-like 1 (pseudogene)
Other alias
HGNC (Hugo) WHAMMP3
LocusID (NCBI) 339005
Atlas_Id 75762
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 22664739 and ends at 22685367 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WHAMMP3   27892
Cards
Entrez_Gene (NCBI)WHAMMP3  339005  WAS protein homolog associated with actin, golgi membranes and microtubules pseudogene 3
AliasesWHAMML1; WHDC1L1
GeneCards (Weizmann)WHAMMP3
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr15:22664739-22685367 [Contig_View]  WHAMMP3 [Vega]
TCGA cBioPortalWHAMMP3
AceView (NCBI)WHAMMP3
Genatlas (Paris)WHAMMP3
WikiGenes339005
SOURCE (Princeton)WHAMMP3
Genetics Home Reference (NIH)WHAMMP3
Genomic and cartography
GoldenPath hg38 (UCSC)WHAMMP3  -     chr15:22664739-22685367 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)WHAMMP3  -     15q11.2   [Description]    (hg19-Feb_2009)
GoldenPathWHAMMP3 - 15q11.2 [CytoView hg19]  WHAMMP3 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBIWHAMMP3 [Mapview hg19]  WHAMMP3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AL833132 BC018097 BC044610 BC048987 BC093703
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)WHAMMP3
Cluster EST : UnigeneHs.212670 [ NCBI ]
CGAP (NCI)Hs.212670
Gene ExpressionWHAMMP3 [ NCBI-GEO ]   WHAMMP3 [ EBI - ARRAY_EXPRESS ]   WHAMMP3 [ SEEK ]   WHAMMP3 [ MEM ]
Gene Expression Viewer (FireBrowse)WHAMMP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339005
GTEX Portal (Tissue expression)WHAMMP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1A5X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1A5X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1A5X7
Splice isoforms : SwissVarQ1A5X7
PhosPhoSitePlusQ1A5X7
Domains : Interpro (EBI)JMY/WHAMM    WHAMM   
Domain families : Pfam (Sanger)JMY (PF15871)   
Domain families : Pfam (NCBI)pfam15871   
Conserved Domain (NCBI)WHAMMP3
DMDM Disease mutations339005
Blocks (Seattle)WHAMMP3
SuperfamilyQ1A5X7
Peptide AtlasQ1A5X7
IPIIPI00402504   IPI00796089   
Protein Interaction databases
DIP (DOE-UCLA)Q1A5X7
IntAct (EBI)Q1A5X7
BioGRIDWHAMMP3
STRING (EMBL)WHAMMP3
ZODIACWHAMMP3
Ontologies - Pathways
QuickGOQ1A5X7
Ontology : AmiGOcytoplasm  ER to Golgi vesicle-mediated transport  cell cycle arrest  GTP-Rho binding  endoplasmic reticulum-Golgi intermediate compartment membrane  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex binding  
Ontology : EGO-EBIcytoplasm  ER to Golgi vesicle-mediated transport  cell cycle arrest  GTP-Rho binding  endoplasmic reticulum-Golgi intermediate compartment membrane  Arp2/3 complex-mediated actin nucleation  Arp2/3 complex binding  
NDEx NetworkWHAMMP3
Atlas of Cancer Signalling NetworkWHAMMP3
Wikipedia pathwaysWHAMMP3
Orthology - Evolution
OrthoDB339005
Phylogenetic Trees/Animal Genes : TreeFamWHAMMP3
HOGENOMQ1A5X7
Homologs : HomoloGeneWHAMMP3
Homology/Alignments : Family Browser (UCSC)WHAMMP3
Gene fusions - Rearrangements
Fusion : QuiverWHAMMP3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerWHAMMP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)WHAMMP3
dbVarWHAMMP3
ClinVarWHAMMP3
1000_GenomesWHAMMP3 
Exome Variant ServerWHAMMP3
Varsome BrowserWHAMMP3
Genetic variants : HAPMAP339005
Genomic Variants (DGV)WHAMMP3 [DGVbeta]
DECIPHERWHAMMP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisWHAMMP3 
Mutations
ICGC Data PortalWHAMMP3 
TCGA Data PortalWHAMMP3 
Broad Tumor PortalWHAMMP3
OASIS PortalWHAMMP3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDWHAMMP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch WHAMMP3
DgiDB (Drug Gene Interaction Database)WHAMMP3
DoCM (Curated mutations)WHAMMP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)WHAMMP3 (select a term)
intoGenWHAMMP3
Cancer3DWHAMMP3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETWHAMMP3
MedgenWHAMMP3
Genetic Testing Registry WHAMMP3
NextProtQ1A5X7 [Medical]
TSGene339005
GENETestsWHAMMP3
Target ValidationWHAMMP3
Huge Navigator WHAMMP3 [HugePedia]
snp3D : Map Gene to Disease339005
BioCentury BCIQWHAMMP3
ClinGenWHAMMP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339005
Chemical/Pharm GKB GenePA142670570
Clinical trialWHAMMP3
Miscellaneous
canSAR (ICR)WHAMMP3 (select the gene name)
DataMed IndexWHAMMP3
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineWHAMMP3
EVEXWHAMMP3
GoPubMedWHAMMP3
iHOPWHAMMP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:01 CEST 2019
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