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WNT10A (wingless-type MMTV integration site family, member 10A)

Identity

Other namesOODD
SSPS
STHAG4
HGNC (Hugo) WNT10A
LocusID (NCBI) 80326
Location 2q35
Location_base_pair Starts at 219745255 and ends at 219758651 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)WNT10A   13829
Entrez_Gene (NCBI)WNT10A  80326  wingless-type MMTV integration site family, member 10A
Cards
GeneCards (Weizmann)WNT10A
Ensembl (Hinxton)ENSG00000135925 [Gene_View]  chr2:219745255-219758651 [Contig_View]  WNT10A [Vega]
AceView (NCBI)WNT10A
Genatlas (Paris)WNT10A
SOURCE (Stanford)NM_025216
Genomic and cartography
GoldenPath (UCSC)WNT10A  -  2q35   chr2:219745255-219758651 +  2q35   [Description]    (hg19-Feb_2009)
EnsemblWNT10A - 2q35 [CytoView]
Mapping of homologs : NCBIWNT10A [Mapview]
OMIM150400   224750   257980   606268   
Gene and transcription
Genbank (Entrez)AB059569 AK024363 AK315081 AY009400 BC003544
RefSeq transcript (SRS)NM_025216
RefSeq transcript (Entrez)NM_025216
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NG_012179 NT_005403 NW_001838865 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NG_012179 NT_005403 NW_001838865 NW_004078008
Consensus coding sequences : CCDS (NCBI)WNT10A
Cluster EST : UnigeneHs.121540 [ SRS ] Hs.121540 [ NCBI ]
CGAP (NCI)Hs.121540
Alternative Splicing : Fast-db (Paris)GSHG0017204
Alternative Splicing GalleryENSG00000135925
Gene ExpressionWNT10A [ NCBI-GEO ]   WNT10A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9GZT5 (SRS) Q9GZT5 (Uniprot)
NextProtQ9GZT5
With graphics : InterProQ9GZT5
Splice isoforms : SwissVarQ9GZT5(Swissvar)
Domaine pattern : Prosite (SRS)WNT1 (PS00246)   
Domaine pattern : Prosite (Expaxy)WNT1 (PS00246)   
Domains : Interpro (SRS)Wnt    Wnt10    Wnt_CS   
Domains : Interpro (EBI)Wnt    Wnt10    Wnt_CS   
Related proteins : CluSTrQ9GZT5
Domain families : Pfam (SRS)wnt (PF00110)   
Domain families : Pfam (Sanger)wnt (PF00110)   
Domain families : Pfam (NCBI)pfam00110   
Domain families : Smart (EMBL)WNT1 (SM00097)  
DMDM80326
Blocks (Seattle)Q9GZT5
Human Protein AtlasENSG00000135925
HPRD16207
IPIIPI00026370   IPI00926562   
Protein Interaction databases
DIP (DOE-UCLA)Q9GZT5
IntAct (EBI)Q9GZT5
FunCoupENSG00000135925
REACTOMEWNT10A
Protein Interaction Database80326
BioGRIDWNT10A
InParanoidQ9GZT5
Interologous Interaction database Q9GZT5
IntegromeDBWNT10A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)WNT10A
SNP (GeneSNP Utah)WNT10A
SNP : HGBaseWNT10A
Genetic variants : HAPMAPWNT10A
Somatic Mutations in Cancer : COSMICWNT10A 
CONAN: Copy Number AnalysisWNT10A 
Mutations and Diseases : HGMDWNT10A
OMIM150400    224750    257980    606268   
GENETests150400    224750    257980    606268   
Disease Genetic AssociationWNT10A
Huge Navigator WNT10A [HugePedia]  WNT10A [HugeCancerGEM]
Genomic VariantsWNT10A  WNT10A [DGVbeta]
ClinVarWNT10A
snp3D : Map Gene to Disease80326
General knowledge
Homologs : HomoloGeneWNT10A
Homology/Alignments : Family Browser (UCSC)WNT10A
Phylogenetic Trees/Animal Genes : TreeFamWNT10A
Chemical/Protein Interactions : CTD80326
Chemical/Pharm GKB GenePA37817
Clinical trialWNT10A
Cancer Resource (Charite)ENSG00000135925
Ontology : AmiGOhair follicle development  frizzled binding  proteinaceous extracellular matrix  extracellular space  positive regulation of gene expression  neural crest cell differentiation  Wnt receptor signaling pathway  neuron differentiation  hair follicle morphogenesis  odontogenesis  regulation of odontogenesis of dentin-containing tooth  tongue development  skin development  cell fate commitment  epidermis morphogenesis  sebaceous gland development  cellular response to transforming growth factor beta stimulus  
Ontology : EGO-EBIhair follicle development  frizzled binding  proteinaceous extracellular matrix  extracellular space  positive regulation of gene expression  neural crest cell differentiation  Wnt receptor signaling pathway  neuron differentiation  hair follicle morphogenesis  odontogenesis  regulation of odontogenesis of dentin-containing tooth  tongue development  skin development  cell fate commitment  epidermis morphogenesis  sebaceous gland development  cellular response to transforming growth factor beta stimulus  
Pathways : KEGGWnt signaling pathwayHedgehog signaling pathway
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneWNT10A
iHOPWNT10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:35:31 CEST 2013
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