| Nomenclature |
|---|
| HGNC (Hugo) | XAB2 14089 |
| Cards |
|---|
| Entrez_Gene (NCBI) | XAB2 56949 XPA binding protein 2 |
| Aliases | HCNP; HCRN; NTC90; SYF1 |
| GeneCards (Weizmann) | XAB2 |
| Ensembl hg19 (Hinxton) | ENSG00000076924 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000076924 [Gene_View] ENSG00000076924 [Sequence] chr19:7619525-7629553 [Contig_View] XAB2 [Vega] |
| ICGC DataPortal | ENSG00000076924 |
| TCGA cBioPortal | XAB2 |
| AceView (NCBI) | XAB2 |
| Genatlas (Paris) | XAB2 |
| WikiGenes | 56949 |
| SOURCE (Princeton) | XAB2 |
| Genetics Home Reference (NIH) | XAB2 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | XAB2 - chr19:7619525-7629553 - 19p13.2 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | XAB2 - 19p13.2 [Description] (hg19-Feb_2009) |
| GoldenPath | XAB2 - 19p13.2 [CytoView hg19] XAB2 - 19p13.2 [CytoView hg38] |
| ImmunoBase | ENSG00000076924 |
| Mapping of homologs : NCBI | XAB2 [Mapview hg19] XAB2 [Mapview hg38] |
| OMIM | 610850 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AB026111 AB033003 AF226051 AF258567 AF272147 |
| RefSeq transcript (Entrez) | NM_020196 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | XAB2 |
| Cluster EST : Unigene | Hs.9822 [ NCBI ] |
| CGAP (NCI) | Hs.9822 |
| Alternative Splicing Gallery | ENSG00000076924 |
| Gene Expression | XAB2 [ NCBI-GEO ] XAB2 [ EBI - ARRAY_EXPRESS ]
XAB2 [ SEEK ] XAB2 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | XAB2 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 56949 |
| GTEX Portal (Tissue expression) | XAB2 |
| Human Protein Atlas | ENSG00000076924-XAB2 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q9HCS7 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q9HCS7 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q9HCS7 |
| Splice isoforms : SwissVar | Q9HCS7 |
| PhosPhoSitePlus | Q9HCS7 |
| Domains : Interpro (EBI) | HAT TPR-contain_dom TPR-like_helical_dom_sf TPR_repeat |
| Domain families : Pfam (Sanger) | TPR_8 (PF13181) |
| Domain families : Pfam (NCBI) | pfam13181 |
| Domain families : Smart (EMBL) | HAT (SM00386) TPR (SM00028) |
| Conserved Domain (NCBI) | XAB2 |
| DMDM Disease mutations | 56949 |
| Blocks (Seattle) | XAB2 |
| PDB (RSDB) | 5MQF 5XJC |
| PDB Europe | 5MQF 5XJC |
| PDB (PDBSum) | 5MQF 5XJC |
| PDB (IMB) | 5MQF 5XJC |
| Structural Biology KnowledgeBase | 5MQF 5XJC |
| SCOP (Structural Classification of Proteins) | 5MQF 5XJC |
| CATH (Classification of proteins structures) | 5MQF 5XJC |
| Superfamily | Q9HCS7 |
| Human Protein Atlas [tissue] | ENSG00000076924-XAB2 [tissue] |
| Peptide Atlas | Q9HCS7 |
| HPRD | 18306 |
| IPI | IPI00163084 IPI01015328 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q9HCS7 |
| IntAct (EBI) | Q9HCS7 |
| FunCoup | ENSG00000076924 |
| BioGRID | XAB2 |
| STRING (EMBL) | XAB2 |
| ZODIAC | XAB2 |
| Ontologies - Pathways |
|---|
| QuickGO | Q9HCS7 |
| Ontology : AmiGO | generation of catalytic spliceosome for first transesterification step mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome Prp19 complex blastocyst development protein binding nucleus nucleus nucleoplasm transcription-coupled nucleotide-excision repair transcription-coupled nucleotide-excision repair transcription, DNA-templated membrane cerebral cortex development U2-type catalytic step 2 spliceosome U2-type catalytic step 2 spliceosome catalytic step 2 spliceosome catalytic step 2 spliceosome post-mRNA release spliceosomal complex |
| Ontology : EGO-EBI | generation of catalytic spliceosome for first transesterification step mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome mRNA splicing, via spliceosome Prp19 complex blastocyst development protein binding nucleus nucleus nucleoplasm transcription-coupled nucleotide-excision repair transcription-coupled nucleotide-excision repair transcription, DNA-templated membrane cerebral cortex development U2-type catalytic step 2 spliceosome U2-type catalytic step 2 spliceosome catalytic step 2 spliceosome catalytic step 2 spliceosome post-mRNA release spliceosomal complex |
| Pathways : KEGG | Spliceosome |
| NDEx Network | XAB2 |
| Atlas of Cancer Signalling Network | XAB2 |
| Wikipedia pathways | XAB2 |
| Orthology - Evolution |
|---|
| OrthoDB | 56949 |
| GeneTree (enSembl) | ENSG00000076924 |
| Phylogenetic Trees/Animal Genes : TreeFam | XAB2 |
| HOGENOM | Q9HCS7 |
| Homologs : HomoloGene | XAB2 |
| Homology/Alignments : Family Browser (UCSC) | XAB2 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | XAB2 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | XAB2 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | XAB2 |
| dbVar | XAB2 |
| ClinVar | XAB2 |
| 1000_Genomes | XAB2 |
| Exome Variant Server | XAB2 |
| ExAC (Exome Aggregation Consortium) | ENSG00000076924 |
| GNOMAD Browser | ENSG00000076924 |
| Varsome Browser | XAB2 |
| Genetic variants : HAPMAP | 56949 |
| Genomic Variants (DGV) | XAB2 [DGVbeta] |
| DECIPHER | XAB2 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | XAB2 |
| Mutations |
|---|
| ICGC Data Portal | XAB2 |
| TCGA Data Portal | XAB2 |
| Broad Tumor Portal | XAB2 |
| OASIS Portal | XAB2 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | XAB2 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | XAB2 |
| Mutations and Diseases : HGMD | XAB2 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search XAB2 |
| DgiDB (Drug Gene Interaction Database) | XAB2 |
| DoCM (Curated mutations) | XAB2 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | XAB2 (select a term) |
| intoGen | XAB2 |
| Cancer3D | XAB2(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 610850 |
| Orphanet | |
| DisGeNET | XAB2 |
| Medgen | XAB2 |
| Genetic Testing Registry | XAB2
|
| NextProt | Q9HCS7 [Medical] |
| TSGene | 56949 |
| GENETests | XAB2 |
| Target Validation | XAB2 |
| Huge Navigator |
XAB2 [HugePedia] |
| snp3D : Map Gene to Disease | 56949 |
| BioCentury BCIQ | XAB2 |
| ClinGen | XAB2 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 56949 |
| Chemical/Pharm GKB Gene | PA134905925 |
| Clinical trial | XAB2 |
| Miscellaneous |
|---|
| canSAR (ICR) | XAB2 (select the gene name) |
| DataMed Index | XAB2 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 56 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | XAB2 |
| EVEX | XAB2 |
| GoPubMed | XAB2 |
| iHOP | XAB2 |
