Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XAGE1A (X antigen family member 1A)

Identity

Alias_namesGAGED2
XAGE1
G antigen, family D, 2
X antigen family, member 1
X antigen family, member 1A
Alias_symbol (synonym)XAGE-1
CT12.1a
Other aliasCT12.1
CT12.1A
CT12.1B
CTP9
XAGE1B
HGNC (Hugo) XAGE1A
LocusID (NCBI) 653220
Atlas_Id 57293
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 52495821 and ends at 52500811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)XAGE1A   4111
Cards
Entrez_Gene (NCBI)XAGE1A  653220  X antigen family member 1A
AliasesCT12.1; CT12.1A; CT12.1B; CTP9; 
GAGED2; XAGE-1; XAGE1; XAGE1B
GeneCards (Weizmann)XAGE1A
Ensembl hg19 (Hinxton)ENSG00000204379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204379 [Gene_View]  ENSG00000204379 [Sequence]  chrX:52495821-52500811 [Contig_View]  XAGE1A [Vega]
ICGC DataPortalENSG00000204379
TCGA cBioPortalXAGE1A
AceView (NCBI)XAGE1A
Genatlas (Paris)XAGE1A
WikiGenes653220
SOURCE (Princeton)XAGE1A
Genetics Home Reference (NIH)XAGE1A
Genomic and cartography
GoldenPath hg38 (UCSC)XAGE1A  -     chrX:52495821-52500811 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XAGE1A  -     Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPathXAGE1A - Xp11.22 [CytoView hg19]  XAGE1A - Xp11.22 [CytoView hg38]
ImmunoBaseENSG00000204379
Mapping of homologs : NCBIXAGE1A [Mapview hg19]  XAGE1A [Mapview hg38]
OMIM300742   300743   
Gene and transcription
Genbank (Entrez)AF251237 AJ290447 AJ318878 AJ318879 BC009538
RefSeq transcript (Entrez)NM_001097591 NM_001097592 NM_001097593 NM_001097594 NM_001097595 NM_001097596
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XAGE1A
Cluster EST : UnigeneHs.584511 [ NCBI ]
CGAP (NCI)Hs.584511
Alternative Splicing GalleryENSG00000204379
Gene ExpressionXAGE1A [ NCBI-GEO ]   XAGE1A [ EBI - ARRAY_EXPRESS ]   XAGE1A [ SEEK ]   XAGE1A [ MEM ]
Gene Expression Viewer (FireBrowse)XAGE1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653220
GTEX Portal (Tissue expression)XAGE1A
Human Protein AtlasENSG00000204379-XAGE1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HD64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HD64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HD64
Splice isoforms : SwissVarQ9HD64
PhosPhoSitePlusQ9HD64
Domains : Interpro (EBI)GAGE_fam   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XAGE1A
DMDM Disease mutations653220
Blocks (Seattle)XAGE1A
SuperfamilyQ9HD64
Human Protein Atlas [tissue]ENSG00000204379-XAGE1A [tissue]
Peptide AtlasQ9HD64
Protein Interaction databases
DIP (DOE-UCLA)Q9HD64
IntAct (EBI)Q9HD64
FunCoupENSG00000204379
BioGRIDXAGE1A
STRING (EMBL)XAGE1A
ZODIACXAGE1A
Ontologies - Pathways
QuickGOQ9HD64
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkXAGE1A
Atlas of Cancer Signalling NetworkXAGE1A
Wikipedia pathwaysXAGE1A
Orthology - Evolution
OrthoDB653220
GeneTree (enSembl)ENSG00000204379
Phylogenetic Trees/Animal Genes : TreeFamXAGE1A
HOGENOMQ9HD64
Homologs : HomoloGeneXAGE1A
Homology/Alignments : Family Browser (UCSC)XAGE1A
Gene fusions - Rearrangements
Fusion : QuiverXAGE1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXAGE1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XAGE1A
dbVarXAGE1A
ClinVarXAGE1A
1000_GenomesXAGE1A 
Exome Variant ServerXAGE1A
ExAC (Exome Aggregation Consortium)ENSG00000204379
GNOMAD BrowserENSG00000204379
Varsome BrowserXAGE1A
Genetic variants : HAPMAP653220
Genomic Variants (DGV)XAGE1A [DGVbeta]
DECIPHERXAGE1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXAGE1A 
Mutations
ICGC Data PortalXAGE1A 
TCGA Data PortalXAGE1A 
Broad Tumor PortalXAGE1A
OASIS PortalXAGE1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXAGE1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DXAGE1A
Mutations and Diseases : HGMDXAGE1A
BioMutasearch XAGE1A
DgiDB (Drug Gene Interaction Database)XAGE1A
DoCM (Curated mutations)XAGE1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XAGE1A (select a term)
intoGenXAGE1A
Cancer3DXAGE1A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300742    300743   
Orphanet
DisGeNETXAGE1A
MedgenXAGE1A
Genetic Testing Registry XAGE1A
NextProtQ9HD64 [Medical]
TSGene653220
GENETestsXAGE1A
Target ValidationXAGE1A
Huge Navigator XAGE1A [HugePedia]
snp3D : Map Gene to Disease653220
BioCentury BCIQXAGE1A
ClinGenXAGE1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653220
Chemical/Pharm GKB GenePA145147615
Clinical trialXAGE1A
Miscellaneous
canSAR (ICR)XAGE1A (select the gene name)
DataMed IndexXAGE1A
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXAGE1A
EVEXXAGE1A
GoPubMedXAGE1A
iHOPXAGE1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:15:29 CET 2019
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