Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XCL1 (X-C motif chemokine ligand 1)

Identity

Alias_namesLTN
SCYC1
small inducible cytokine subfamily C, member 1 (lymphotactin)
chemokine (C motif) ligand 1
Alias_symbol (synonym)LPTN
ATAC
SCM-1a
SCM-1
Other aliasSCM1
SCM1A
HGNC (Hugo) XCL1
LocusID (NCBI) 6375
Atlas_Id 52145
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168576473 and ends at 168582077 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XCL1   10645
Cards
Entrez_Gene (NCBI)XCL1  6375  X-C motif chemokine ligand 1
AliasesATAC; LPTN; LTN; SCM-1; 
SCM-1a; SCM1; SCM1A; SCYC1
GeneCards (Weizmann)XCL1
Ensembl hg19 (Hinxton)ENSG00000143184 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143184 [Gene_View]  ENSG00000143184 [Sequence]  chr1:168576473-168582077 [Contig_View]  XCL1 [Vega]
ICGC DataPortalENSG00000143184
TCGA cBioPortalXCL1
AceView (NCBI)XCL1
Genatlas (Paris)XCL1
WikiGenes6375
SOURCE (Princeton)XCL1
Genetics Home Reference (NIH)XCL1
Genomic and cartography
GoldenPath hg38 (UCSC)XCL1  -     chr1:168576473-168582077 +  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XCL1  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathXCL1 - 1q24.2 [CytoView hg19]  XCL1 - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000143184
Mapping of homologs : NCBIXCL1 [Mapview hg19]  XCL1 [Mapview hg38]
OMIM600250   
Gene and transcription
Genbank (Entrez)BC069817 BC070309 BF433809 D43768 U23772
RefSeq transcript (Entrez)NM_002995
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XCL1
Alternative Splicing GalleryENSG00000143184
Gene ExpressionXCL1 [ NCBI-GEO ]   XCL1 [ EBI - ARRAY_EXPRESS ]   XCL1 [ SEEK ]   XCL1 [ MEM ]
Gene Expression Viewer (FireBrowse)XCL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6375
GTEX Portal (Tissue expression)XCL1
Human Protein AtlasENSG00000143184-XCL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XCL1
DMDM Disease mutations6375
Blocks (Seattle)XCL1
Human Protein Atlas [tissue]ENSG00000143184-XCL1 [tissue]
HPRD02595
IPIIPI00026979   
Protein Interaction databases
FunCoupENSG00000143184
BioGRIDXCL1
STRING (EMBL)XCL1
ZODIACXCL1
Ontologies - Pathways
Huge Navigator XCL1 [HugePedia]
snp3D : Map Gene to Disease6375
BioCentury BCIQXCL1
ClinGenXCL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6375
Chemical/Pharm GKB GenePA35575
Clinical trialXCL1
Miscellaneous
canSAR (ICR)XCL1 (select the gene name)
DataMed IndexXCL1
Probes
Litterature
PubMed58 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXCL1
EVEXXCL1
GoPubMedXCL1
iHOPXCL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:48 CET 2020

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