Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XCL2 (X-C motif chemokine ligand 2)

Identity

Alias_namesSCYC2
small inducible cytokine subfamily C, member 2
chemokine (C motif) ligand 2
Alias_symbol (synonym)SCM-1b
Other aliasSCM1B
HGNC (Hugo) XCL2
LocusID (NCBI) 6846
Atlas_Id 55230
Location 1q24.2  [Link to chromosome band 1q24]
Location_base_pair Starts at 168540765 and ends at 168543997 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XCL2   10646
Cards
Entrez_Gene (NCBI)XCL2  6846  X-C motif chemokine ligand 2
AliasesSCM-1b; SCM1B; SCYC2
GeneCards (Weizmann)XCL2
Ensembl hg19 (Hinxton)ENSG00000143185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143185 [Gene_View]  ENSG00000143185 [Sequence]  chr1:168540765-168543997 [Contig_View]  XCL2 [Vega]
ICGC DataPortalENSG00000143185
TCGA cBioPortalXCL2
AceView (NCBI)XCL2
Genatlas (Paris)XCL2
WikiGenes6846
SOURCE (Princeton)XCL2
Genetics Home Reference (NIH)XCL2
Genomic and cartography
GoldenPath hg38 (UCSC)XCL2  -     chr1:168540765-168543997 -  1q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XCL2  -     1q24.2   [Description]    (hg19-Feb_2009)
GoldenPathXCL2 - 1q24.2 [CytoView hg19]  XCL2 - 1q24.2 [CytoView hg38]
ImmunoBaseENSG00000143185
Mapping of homologs : NCBIXCL2 [Mapview hg19]  XCL2 [Mapview hg38]
OMIM604828   
Gene and transcription
Genbank (Entrez)BC069360 BC070308 BE218461 CD521967
RefSeq transcript (Entrez)NM_003175
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XCL2
Alternative Splicing GalleryENSG00000143185
Gene ExpressionXCL2 [ NCBI-GEO ]   XCL2 [ EBI - ARRAY_EXPRESS ]   XCL2 [ SEEK ]   XCL2 [ MEM ]
Gene Expression Viewer (FireBrowse)XCL2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)6846
GTEX Portal (Tissue expression)XCL2
Human Protein AtlasENSG00000143185-XCL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XCL2
DMDM Disease mutations6846
Blocks (Seattle)XCL2
Human Protein Atlas [tissue]ENSG00000143185-XCL2 [tissue]
HPRD05317
IPIIPI00002528   
Protein Interaction databases
FunCoupENSG00000143185
BioGRIDXCL2
STRING (EMBL)XCL2
ZODIACXCL2
Ontologies - Pathways
Huge Navigator XCL2 [HugePedia]
snp3D : Map Gene to Disease6846
BioCentury BCIQXCL2
ClinGenXCL2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6846
Chemical/Pharm GKB GenePA35576
Clinical trialXCL2
Miscellaneous
canSAR (ICR)XCL2 (select the gene name)
DataMed IndexXCL2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXCL2
EVEXXCL2
GoPubMedXCL2
iHOPXCL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:48 CET 2020

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