Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XCR1 (X-C motif chemokine receptor 1)

Identity

Alias_namesGPR5
CCXCR1
chemokine (C motif) XC receptor 1
chemokine (C motif) receptor 1
Other alias
HGNC (Hugo) XCR1
LocusID (NCBI) 2829
Atlas_Id 49758
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 46020799 and ends at 46027487 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TNKS1BP1 (11q12.1) / XCR1 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XCR1   1625
Cards
Entrez_Gene (NCBI)XCR1  2829  X-C motif chemokine receptor 1
AliasesCCXCR1; GPR5
GeneCards (Weizmann)XCR1
Ensembl hg19 (Hinxton)ENSG00000173578 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173578 [Gene_View]  ENSG00000173578 [Sequence]  chr3:46020799-46027487 [Contig_View]  XCR1 [Vega]
ICGC DataPortalENSG00000173578
TCGA cBioPortalXCR1
AceView (NCBI)XCR1
Genatlas (Paris)XCR1
WikiGenes2829
SOURCE (Princeton)XCR1
Genetics Home Reference (NIH)XCR1
Genomic and cartography
GoldenPath hg38 (UCSC)XCR1  -     chr3:46020799-46027487 -  3p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XCR1  -     3p21.31   [Description]    (hg19-Feb_2009)
GoldenPathXCR1 - 3p21.31 [CytoView hg19]  XCR1 - 3p21.31 [CytoView hg38]
ImmunoBaseENSG00000173578
Mapping of homologs : NCBIXCR1 [Mapview hg19]  XCR1 [Mapview hg38]
OMIM600552   
Gene and transcription
Genbank (Entrez)AB189434 AB189435 AK092973 AK314277 BC069075
RefSeq transcript (Entrez)NM_001024644 NM_005283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XCR1
Alternative Splicing GalleryENSG00000173578
Gene ExpressionXCR1 [ NCBI-GEO ]   XCR1 [ EBI - ARRAY_EXPRESS ]   XCR1 [ SEEK ]   XCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)XCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)2829
GTEX Portal (Tissue expression)XCR1
Human Protein AtlasENSG00000173578-XCR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XCR1
DMDM Disease mutations2829
Blocks (Seattle)XCR1
Human Protein Atlas [tissue]ENSG00000173578-XCR1 [tissue]
HPRD02774
IPIIPI00004349   IPI00925948   
Protein Interaction databases
FunCoupENSG00000173578
BioGRIDXCR1
STRING (EMBL)XCR1
ZODIACXCR1
Ontologies - Pathways
Huge Navigator XCR1 [HugePedia]
snp3D : Map Gene to Disease2829
BioCentury BCIQXCR1
ClinGenXCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2829
Chemical/Pharm GKB GenePA35037
Clinical trialXCR1
Miscellaneous
canSAR (ICR)XCR1 (select the gene name)
DataMed IndexXCR1
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXCR1
EVEXXCR1
GoPubMedXCR1
iHOPXCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:48 CET 2020

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