Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XIRP1 (xin actin binding repeat containing 1)

Identity

Alias_namesCMYA1
cardiomyopathy associated 1
Alias_symbol (synonym)DKFZp451D042
Xin
Other alias
HGNC (Hugo) XIRP1
LocusID (NCBI) 165904
Atlas_Id 50564
Location 3p22.2  [Link to chromosome band 3p22]
Location_base_pair Starts at 39183210 and ends at 39192596 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XIRP1 (3p22.2) / IFT88 (13q12.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XIRP1   14301
Cards
Entrez_Gene (NCBI)XIRP1  165904  xin actin binding repeat containing 1
AliasesCMYA1; Xin
GeneCards (Weizmann)XIRP1
Ensembl hg19 (Hinxton)ENSG00000168334 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168334 [Gene_View]  ENSG00000168334 [Sequence]  chr3:39183210-39192596 [Contig_View]  XIRP1 [Vega]
ICGC DataPortalENSG00000168334
TCGA cBioPortalXIRP1
AceView (NCBI)XIRP1
Genatlas (Paris)XIRP1
WikiGenes165904
SOURCE (Princeton)XIRP1
Genetics Home Reference (NIH)XIRP1
Genomic and cartography
GoldenPath hg38 (UCSC)XIRP1  -     chr3:39183210-39192596 -  3p22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XIRP1  -     3p22.2   [Description]    (hg19-Feb_2009)
GoldenPathXIRP1 - 3p22.2 [CytoView hg19]  XIRP1 - 3p22.2 [CytoView hg38]
ImmunoBaseENSG00000168334
Mapping of homologs : NCBIXIRP1 [Mapview hg19]  XIRP1 [Mapview hg38]
OMIM609777   
Gene and transcription
Genbank (Entrez)AJ271461 AJ626899 AJ626900 AK095941 AK096421
RefSeq transcript (Entrez)NM_001198621 NM_001351377 NM_194293
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XIRP1
Alternative Splicing GalleryENSG00000168334
Gene ExpressionXIRP1 [ NCBI-GEO ]   XIRP1 [ EBI - ARRAY_EXPRESS ]   XIRP1 [ SEEK ]   XIRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)XIRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)165904
GTEX Portal (Tissue expression)XIRP1
Human Protein AtlasENSG00000168334-XIRP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XIRP1
DMDM Disease mutations165904
Blocks (Seattle)XIRP1
Human Protein Atlas [tissue]ENSG00000168334-XIRP1 [tissue]
HPRD16727
IPIIPI00794464   IPI00793675   IPI00794625   
Protein Interaction databases
FunCoupENSG00000168334
BioGRIDXIRP1
STRING (EMBL)XIRP1
ZODIACXIRP1
Ontologies - Pathways
Huge Navigator XIRP1 [HugePedia]
snp3D : Map Gene to Disease165904
BioCentury BCIQXIRP1
ClinGenXIRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD165904
Chemical/Pharm GKB GenePA162409336
Clinical trialXIRP1
Miscellaneous
canSAR (ICR)XIRP1 (select the gene name)
DataMed IndexXIRP1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXIRP1
EVEXXIRP1
GoPubMedXIRP1
iHOPXIRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:49 CET 2020

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