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XIRP2 (xin actin binding repeat containing 2)

Identity

Alias_namesCMYA3
cardiomyopathy associated 3
Other alias
HGNC (Hugo) XIRP2
LocusID (NCBI) 129446
Atlas_Id 53666
Location 2q24.3  [Link to chromosome band 2q24]
Location_base_pair Starts at 166888487 and ends at 167259751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SDHD (11q23.1) / XIRP2 (2q24.3)XIRP2 (2q24.3) / XIRP2 (2q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0202p25q24ID105237


External links

Nomenclature
HGNC (Hugo)XIRP2   14303
Cards
Entrez_Gene (NCBI)XIRP2  129446  xin actin binding repeat containing 2
AliasesCMYA3
GeneCards (Weizmann)XIRP2
Ensembl hg19 (Hinxton)ENSG00000163092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163092 [Gene_View]  ENSG00000163092 [Sequence]  chr2:166888487-167259751 [Contig_View]  XIRP2 [Vega]
ICGC DataPortalENSG00000163092
TCGA cBioPortalXIRP2
AceView (NCBI)XIRP2
Genatlas (Paris)XIRP2
WikiGenes129446
SOURCE (Princeton)XIRP2
Genetics Home Reference (NIH)XIRP2
Genomic and cartography
GoldenPath hg38 (UCSC)XIRP2  -     chr2:166888487-167259751 +  2q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XIRP2  -     2q24.3   [Description]    (hg19-Feb_2009)
GoldenPathXIRP2 - 2q24.3 [CytoView hg19]  XIRP2 - 2q24.3 [CytoView hg38]
ImmunoBaseENSG00000163092
Mapping of homologs : NCBIXIRP2 [Mapview hg19]  XIRP2 [Mapview hg38]
OMIM609778   
Gene and transcription
Genbank (Entrez)AA665183 AJ626901 AK056582 AK092683 AK096430
RefSeq transcript (Entrez)NM_001079810 NM_001199143 NM_001199144 NM_001199145 NM_152381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XIRP2
Alternative Splicing GalleryENSG00000163092
Gene ExpressionXIRP2 [ NCBI-GEO ]   XIRP2 [ EBI - ARRAY_EXPRESS ]   XIRP2 [ SEEK ]   XIRP2 [ MEM ]
Gene Expression Viewer (FireBrowse)XIRP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)129446
GTEX Portal (Tissue expression)XIRP2
Human Protein AtlasENSG00000163092-XIRP2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XIRP2
DMDM Disease mutations129446
Blocks (Seattle)XIRP2
Human Protein Atlas [tissue]ENSG00000163092-XIRP2 [tissue]
HPRD10267
IPIIPI00885004   IPI01015807   IPI00167400   IPI00915318   IPI00893002   IPI00915341   IPI00550232   
Protein Interaction databases
FunCoupENSG00000163092
BioGRIDXIRP2
STRING (EMBL)XIRP2
ZODIACXIRP2
Ontologies - Pathways
Huge Navigator XIRP2 [HugePedia]
snp3D : Map Gene to Disease129446
BioCentury BCIQXIRP2
ClinGenXIRP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD129446
Chemical/Pharm GKB GenePA162409337
Clinical trialXIRP2
Miscellaneous
canSAR (ICR)XIRP2 (select the gene name)
DataMed IndexXIRP2
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXIRP2
EVEXXIRP2
GoPubMedXIRP2
iHOPXIRP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:49 CET 2020

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