XKR6 (XK related 6)

2014-11-01  

Identity

HGNC
XKR6
LOCATION
8p23.1
LOCUSID
286046
ALIAS
C8orf21,C8orf5,C8orf7,XRG6
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 286046
HGNC: 27806
Ensembl: ENSG00000171044

Variants:

dbSNP: 286046
ClinVar: 286046
TCGA: ENSG00000171044
COSMIC: XKR6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000171044ENST00000297303Q96KT3
ENSG00000171044ENST00000382461H7BYF9
ENSG00000171044ENST00000416569Q5GH73
ENSG00000171044ENST00000529336H0YEU9

Expression (GTEx)

0
1
2
3
4
5
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
209628502011A targeted association study in systemic lupus erythematosus identifies multiple susceptibility alleles.21
209722502011Genetic loci associated with lipid concentrations and cardiovascular risk factors in the Korean population.20
201601932010Investigation of variants identified in caucasian genome-wide association studies for plasma high-density lipoprotein cholesterol and triglycerides levels in Mexican dyslipidemic study samples.16
299674812018Genetic variants in systemic lupus erythematosus susceptibility loci, XKR6 and GLT1D1 are associated with childhood-onset SLE in a Korean cohort.4
314297112019Association between the XKR6 rs7819412 SNP and serum lipid levels and the risk of coronary artery disease and ischemic stroke.0

Citation

Dessen P

XKR6 (XK related 6)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/75784/xkr6