Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XKR9 (XK related 9)

Identity

Alias_namesX Kell blood group precursor-related family, member 9
XK, Kell blood group complex subunit-related family, member 9
Other aliasXRG9
HGNC (Hugo) XKR9
LocusID (NCBI) 389668
Atlas_Id 54787
Location 8q13.3  [Link to chromosome band 8q13]
Location_base_pair Starts at 70669447 and ends at 70735942 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LACTB2 (8q13.3) / XKR9 (8q13.3)NCOA2 (8q13.3) / XKR9 (8q13.3)NCOA2 8q13.3 / XKR9 8q13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0808q13q13ID108104 TT_t0808q13q13ID108106


External links

Nomenclature
HGNC (Hugo)XKR9   20937
Cards
Entrez_Gene (NCBI)XKR9  389668  XK related 9
AliasesXRG9
GeneCards (Weizmann)XKR9
Ensembl hg19 (Hinxton)ENSG00000221947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221947 [Gene_View]  ENSG00000221947 [Sequence]  chr8:70669447-70735942 [Contig_View]  XKR9 [Vega]
ICGC DataPortalENSG00000221947
TCGA cBioPortalXKR9
AceView (NCBI)XKR9
Genatlas (Paris)XKR9
WikiGenes389668
SOURCE (Princeton)XKR9
Genetics Home Reference (NIH)XKR9
Genomic and cartography
GoldenPath hg38 (UCSC)XKR9  -     chr8:70669447-70735942 +  8q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XKR9  -     8q13.3   [Description]    (hg19-Feb_2009)
GoldenPathXKR9 - 8q13.3 [CytoView hg19]  XKR9 - 8q13.3 [CytoView hg38]
ImmunoBaseENSG00000221947
Mapping of homologs : NCBIXKR9 [Mapview hg19]  XKR9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AY534247 BC111381 BC137104 BC137105 BC151845
RefSeq transcript (Entrez)NM_001011720 NM_001287258 NM_001287259 NM_001287260
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XKR9
Alternative Splicing GalleryENSG00000221947
Gene ExpressionXKR9 [ NCBI-GEO ]   XKR9 [ EBI - ARRAY_EXPRESS ]   XKR9 [ SEEK ]   XKR9 [ MEM ]
Gene Expression Viewer (FireBrowse)XKR9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)389668
GTEX Portal (Tissue expression)XKR9
Human Protein AtlasENSG00000221947-XKR9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XKR9
DMDM Disease mutations389668
Blocks (Seattle)XKR9
Human Protein Atlas [tissue]ENSG00000221947-XKR9 [tissue]
HPRD18309
IPIIPI00399035   IPI00984846   IPI00985497   
Protein Interaction databases
FunCoupENSG00000221947
BioGRIDXKR9
STRING (EMBL)XKR9
ZODIACXKR9
Ontologies - Pathways
Huge Navigator XKR9 [HugePedia]
snp3D : Map Gene to Disease389668
BioCentury BCIQXKR9
ClinGenXKR9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389668
Chemical/Pharm GKB GenePA142670567
Clinical trialXKR9
Miscellaneous
canSAR (ICR)XKR9 (select the gene name)
DataMed IndexXKR9
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXKR9
EVEXXKR9
GoPubMedXKR9
iHOPXKR9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:16:50 CET 2020

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