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XPR1 (xenotropic and polytropic retrovirus receptor 1)

Identity

Alias_namesxenotropic and polytropic retrovirus receptor
Alias_symbol (synonym)SYG1
X3
SLC53A1
Other aliasIBGC6
HGNC (Hugo) XPR1
LocusID (NCBI) 9213
Atlas_Id 42846
Location 1q25.3  [Link to chromosome band 1q25]
Location_base_pair Starts at 180632010 and ends at 180890279 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RFWD2 (1q25.1) / XPR1 (1q25.3)XPR1 (1q25.3) / BRINP3 (1q31.1)XPR1 (1q25.3) / KIFAP3 (1q24.2)
XPR1 (1q25.3) / RFWD2 (1q25.1)XPR1 (1q25.3) / TOR3A (1q25.2)XPR1 (1q25.3) / TRMT1L (1q25.3)
XPR1 (1q25.3) / TYW3 (1p31.1)RFWD2 1q25.1 / XPR1 1q25.3XPR1 1q25.3 FAM5C
XPR1 1q25.3 / KIFAP3 1q24.2XPR1 1q25.3 / RFWD2 1q25.1XPR1 1q25.3 / TOR3A 1q25.2
XPR1 1q25.3 / TYW3 1p31.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 6 ]

Solid Tumors TranslocLungSmallCellCarcID6651 TT_t0101p31q25ID103625 TT_t0101q24q25ID103999 TT_t0101q25q25ID104012 TT_t0101q25q25ID6667
TT_t0101q25q31ID104014


External links

Nomenclature
HGNC (Hugo)XPR1   12827
Cards
Entrez_Gene (NCBI)XPR1  9213  xenotropic and polytropic retrovirus receptor 1
AliasesIBGC6; SLC53A1; SYG1; X3
GeneCards (Weizmann)XPR1
Ensembl hg19 (Hinxton)ENSG00000143324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000143324 [Gene_View]  ENSG00000143324 [Sequence]  chr1:180632010-180890279 [Contig_View]  XPR1 [Vega]
ICGC DataPortalENSG00000143324
TCGA cBioPortalXPR1
AceView (NCBI)XPR1
Genatlas (Paris)XPR1
WikiGenes9213
SOURCE (Princeton)XPR1
Genetics Home Reference (NIH)XPR1
Genomic and cartography
GoldenPath hg38 (UCSC)XPR1  -     chr1:180632010-180890279 +  1q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XPR1  -     1q25.3   [Description]    (hg19-Feb_2009)
GoldenPathXPR1 - 1q25.3 [CytoView hg19]  XPR1 - 1q25.3 [CytoView hg38]
ImmunoBaseENSG00000143324
Mapping of homologs : NCBIXPR1 [Mapview hg19]  XPR1 [Mapview hg38]
OMIM605237   616413   
Gene and transcription
Genbank (Entrez)AA425354 AB075495 AF089744 AF099082 AF115389
RefSeq transcript (Entrez)NM_001135669 NM_001328662 NM_004736
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XPR1
Alternative Splicing GalleryENSG00000143324
Gene ExpressionXPR1 [ NCBI-GEO ]   XPR1 [ EBI - ARRAY_EXPRESS ]   XPR1 [ SEEK ]   XPR1 [ MEM ]
Gene Expression Viewer (FireBrowse)XPR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9213
GTEX Portal (Tissue expression)XPR1
Human Protein AtlasENSG00000143324-XPR1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XPR1
DMDM Disease mutations9213
Blocks (Seattle)XPR1
Human Protein Atlas [tissue]ENSG00000143324-XPR1 [tissue]
HPRD05574
IPIIPI00295447   IPI00217110   
Protein Interaction databases
FunCoupENSG00000143324
BioGRIDXPR1
STRING (EMBL)XPR1
ZODIACXPR1
Ontologies - Pathways
Huge Navigator XPR1 [HugePedia]
snp3D : Map Gene to Disease9213
BioCentury BCIQXPR1
ClinGenXPR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9213
Chemical/Pharm GKB GenePA37420
Clinical trialXPR1
Miscellaneous
canSAR (ICR)XPR1 (select the gene name)
DataMed IndexXPR1
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXPR1
EVEXXPR1
GoPubMedXPR1
iHOPXPR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:52 CET 2020

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