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XRCC1 (X-ray repair cross complementing 1)

Identity

Alias_namesRCC
X-ray repair complementing defective repair in Chinese hamster cells 1
Other aliasSCAR26
HGNC (Hugo) XRCC1
LocusID (NCBI) 7515
Atlas_Id 42847
Location 19q13.31  [Link to chromosome band 19q13]
Location_base_pair Starts at 43543312 and ends at 43575578 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CEP295 (11q21) / XRCC1 (19q13.31)LLGL2 (17q25.1) / XRCC1 (19q13.31)URI1 (19q12) / XRCC1 (19q13.31)
XRCC1 (19q13.31) / MAL (2q11.1)C19orf2 XRCC1 19q13.31

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]

Solid Tumors TranslocLungAdenocarcID6751 TT_t0219q11q13ID6769 TT_t1919q12q13ID103301


External links

Nomenclature
HGNC (Hugo)XRCC1   12828
LRG (Locus Reference Genomic)LRG_784
Cards
Entrez_Gene (NCBI)XRCC1  7515  X-ray repair cross complementing 1
AliasesRCC; SCAR26
GeneCards (Weizmann)XRCC1
Ensembl hg19 (Hinxton)ENSG00000073050 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000073050 [Gene_View]  ENSG00000073050 [Sequence]  chr19:43543312-43575578 [Contig_View]  XRCC1 [Vega]
ICGC DataPortalENSG00000073050
TCGA cBioPortalXRCC1
AceView (NCBI)XRCC1
Genatlas (Paris)XRCC1
WikiGenes7515
SOURCE (Princeton)XRCC1
Genetics Home Reference (NIH)XRCC1
Genomic and cartography
GoldenPath hg38 (UCSC)XRCC1  -     chr19:43543312-43575578 -  19q13.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XRCC1  -     19q13.31   [Description]    (hg19-Feb_2009)
GoldenPathXRCC1 - 19q13.31 [CytoView hg19]  XRCC1 - 19q13.31 [CytoView hg38]
ImmunoBaseENSG00000073050
Mapping of homologs : NCBIXRCC1 [Mapview hg19]  XRCC1 [Mapview hg38]
OMIM194360   617633   
Gene and transcription
Genbank (Entrez)AB208781 AK293542 AK300163 AK315332 BC023593
RefSeq transcript (Entrez)NM_006297
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XRCC1
Alternative Splicing GalleryENSG00000073050
Gene ExpressionXRCC1 [ NCBI-GEO ]   XRCC1 [ EBI - ARRAY_EXPRESS ]   XRCC1 [ SEEK ]   XRCC1 [ MEM ]
Gene Expression Viewer (FireBrowse)XRCC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7515
GTEX Portal (Tissue expression)XRCC1
Human Protein AtlasENSG00000073050-XRCC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XRCC1
DMDM Disease mutations7515
Blocks (Seattle)XRCC1
Human Protein Atlas [tissue]ENSG00000073050-XRCC1 [tissue]
HPRD01909
IPIIPI00002564   IPI01010850   IPI00911037   IPI01010437   
Protein Interaction databases
FunCoupENSG00000073050
BioGRIDXRCC1
STRING (EMBL)XRCC1
ZODIACXRCC1
Ontologies - Pathways
Huge Navigator XRCC1 [HugePedia]
snp3D : Map Gene to Disease7515
BioCentury BCIQXRCC1
ClinGenXRCC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7515
Chemical/Pharm GKB GenePA369
Clinical trialXRCC1
Miscellaneous
canSAR (ICR)XRCC1 (select the gene name)
DataMed IndexXRCC1
Probes
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXRCC1
EVEXXRCC1
GoPubMedXRCC1
iHOPXRCC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:52 CET 2020

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