Atlas of Genetics and Cytogenetics in Oncology and Haematology


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XXYLT1 (xyloside xylosyltransferase 1)

Identity

Alias_namesC3orf21
chromosome 3 open reading frame 21
Alias_symbol (synonym)FLJ35155
Other alias
HGNC (Hugo) XXYLT1
LocusID (NCBI) 152002
Atlas_Id 57396
Location 3q29  [Link to chromosome band 3q29]
Location_base_pair Starts at 195068284 and ends at 195271166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
XXYLT1 (3q29) / FARP1 (13q32.2)XXYLT1 (3q29) / PLCD4 (2q35)XXYLT1 (3q29) / TPRG1 (3q28)
XXYLT1 (3q29) / XXYLT1 (3q29)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)XXYLT1   26639
Cards
Entrez_Gene (NCBI)XXYLT1  152002  xyloside xylosyltransferase 1
AliasesC3orf21
GeneCards (Weizmann)XXYLT1
Ensembl hg19 (Hinxton)ENSG00000173950 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173950 [Gene_View]  ENSG00000173950 [Sequence]  chr3:195068284-195271166 [Contig_View]  XXYLT1 [Vega]
ICGC DataPortalENSG00000173950
TCGA cBioPortalXXYLT1
AceView (NCBI)XXYLT1
Genatlas (Paris)XXYLT1
WikiGenes152002
SOURCE (Princeton)XXYLT1
Genetics Home Reference (NIH)XXYLT1
Genomic and cartography
GoldenPath hg38 (UCSC)XXYLT1  -     chr3:195068284-195271166 -  3q29   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XXYLT1  -     3q29   [Description]    (hg19-Feb_2009)
GoldenPathXXYLT1 - 3q29 [CytoView hg19]  XXYLT1 - 3q29 [CytoView hg38]
ImmunoBaseENSG00000173950
Mapping of homologs : NCBIXXYLT1 [Mapview hg19]  XXYLT1 [Mapview hg38]
OMIM614552   
Gene and transcription
Genbank (Entrez)AI952430 AK057046 AK075551 AK092474 AK301133
RefSeq transcript (Entrez)NM_001308069 NM_152531
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XXYLT1
Alternative Splicing GalleryENSG00000173950
Gene ExpressionXXYLT1 [ NCBI-GEO ]   XXYLT1 [ EBI - ARRAY_EXPRESS ]   XXYLT1 [ SEEK ]   XXYLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)XXYLT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)152002
GTEX Portal (Tissue expression)XXYLT1
Human Protein AtlasENSG00000173950-XXYLT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XXYLT1
DMDM Disease mutations152002
Blocks (Seattle)XXYLT1
Human Protein Atlas [tissue]ENSG00000173950-XXYLT1 [tissue]
IPIIPI00171410   IPI00165665   IPI00168035   IPI00910604   IPI00927901   IPI00924870   IPI00925004   
Protein Interaction databases
FunCoupENSG00000173950
BioGRIDXXYLT1
STRING (EMBL)XXYLT1
ZODIACXXYLT1
Ontologies - Pathways
Huge Navigator XXYLT1 [HugePedia]
snp3D : Map Gene to Disease152002
BioCentury BCIQXXYLT1
ClinGenXXYLT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152002
Chemical/Pharm GKB GenePA134925222
Clinical trialXXYLT1
Miscellaneous
canSAR (ICR)XXYLT1 (select the gene name)
DataMed IndexXXYLT1
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXXYLT1
EVEXXXYLT1
GoPubMedXXYLT1
iHOPXXYLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:55 CET 2020

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