Atlas of Genetics and Cytogenetics in Oncology and Haematology

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XYLT1 (xylosyltransferase 1)

Identity

Alias_namesxylosyltransferase I
Alias_symbol (synonym)XT-I
PXYLT1
Other aliasDBQD2
XT1
XTI
XYLTI
xylT-I
HGNC (Hugo) XYLT1
LocusID (NCBI) 64131
Atlas_Id 75800
Location 16p12.3  [Link to chromosome band 16p12]
Location_base_pair Starts at 17102324 and ends at 17470881 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MSN (Xq12) / XYLT1 (16p12.3)XYLT1 (16p12.3) / CSNK1D (17q25.3)ZBTB8B (1p35.1) / XYLT1 (16p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)XYLT1   15516
Cards
Entrez_Gene (NCBI)XYLT1  64131  xylosyltransferase 1
AliasesDBQD2; PXYLT1; XT-I; XT1; 
XTI; XYLTI; xylT-I
GeneCards (Weizmann)XYLT1
Ensembl hg19 (Hinxton)ENSG00000103489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000103489 [Gene_View]  ENSG00000103489 [Sequence]  chr16:17102324-17470881 [Contig_View]  XYLT1 [Vega]
ICGC DataPortalENSG00000103489
TCGA cBioPortalXYLT1
AceView (NCBI)XYLT1
Genatlas (Paris)XYLT1
WikiGenes64131
SOURCE (Princeton)XYLT1
Genetics Home Reference (NIH)XYLT1
Genomic and cartography
GoldenPath hg38 (UCSC)XYLT1  -     chr16:17102324-17470881 -  16p12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XYLT1  -     16p12.3   [Description]    (hg19-Feb_2009)
GoldenPathXYLT1 - 16p12.3 [CytoView hg19]  XYLT1 - 16p12.3 [CytoView hg38]
ImmunoBaseENSG00000103489
genome Data Viewer NCBIXYLT1 [Mapview hg19]  
OMIM264800   608124   615777   
Gene and transcription
Genbank (Entrez)AI524006 AJ277441 AJ539163 AK000198 AL050125
RefSeq transcript (Entrez)NM_022166
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XYLT1
Alternative Splicing GalleryENSG00000103489
Gene ExpressionXYLT1 [ NCBI-GEO ]   XYLT1 [ EBI - ARRAY_EXPRESS ]   XYLT1 [ SEEK ]   XYLT1 [ MEM ]
Gene Expression Viewer (FireBrowse)XYLT1 [ Firebrowse - Broad ]
GenevisibleExpression of XYLT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64131
GTEX Portal (Tissue expression)XYLT1
Human Protein AtlasENSG00000103489-XYLT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86Y38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86Y38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86Y38
Splice isoforms : SwissVarQ86Y38
PhosPhoSitePlusQ86Y38
Domains : Interpro (EBI)Glyco_trans_14    Xylosyltrans    XylT   
Domain families : Pfam (Sanger)Branch (PF02485)    Xylo_C (PF12529)   
Domain families : Pfam (NCBI)pfam02485    pfam12529   
Conserved Domain (NCBI)XYLT1
DMDM Disease mutations64131
Blocks (Seattle)XYLT1
PDB (RSDB)6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
PDB Europe6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
PDB (PDBSum)6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
PDB (IMB)6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
Structural Biology KnowledgeBase6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
SCOP (Structural Classification of Proteins)6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
CATH (Classification of proteins structures)6EJ7    6EJ8    6EJ9    6EJA    6EJB    6EJC    6EJD    6EJE    6FOA   
SuperfamilyQ86Y38
Human Protein Atlas [tissue]ENSG00000103489-XYLT1 [tissue]
Peptide AtlasQ86Y38
HPRD12168
IPIIPI00183487   
Protein Interaction databases
DIP (DOE-UCLA)Q86Y38
IntAct (EBI)Q86Y38
FunCoupENSG00000103489
BioGRIDXYLT1
STRING (EMBL)XYLT1
ZODIACXYLT1
Ontologies - Pathways
QuickGOQ86Y38
Ontology : AmiGOGolgi cis cisterna  Golgi membrane  Golgi membrane  extracellular space  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  protein xylosyltransferase activity  proteoglycan biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  ossification involved in bone maturation  metal ion binding  embryonic skeletal system development  chondroitin sulfate proteoglycan biosynthetic process  
Ontology : EGO-EBIGolgi cis cisterna  Golgi membrane  Golgi membrane  extracellular space  glycosaminoglycan biosynthetic process  acetylglucosaminyltransferase activity  heparan sulfate proteoglycan biosynthetic process  heparan sulfate proteoglycan biosynthetic process  integral component of membrane  protein xylosyltransferase activity  protein xylosyltransferase activity  proteoglycan biosynthetic process  glycosaminoglycan metabolic process  chondroitin sulfate biosynthetic process  ossification involved in bone maturation  metal ion binding  embryonic skeletal system development  chondroitin sulfate proteoglycan biosynthetic process  
Pathways : KEGGGlycan structures - biosynthesis 1    Chondroitin sulfate biosynthesis   
NDEx NetworkXYLT1
Atlas of Cancer Signalling NetworkXYLT1
Wikipedia pathwaysXYLT1
Orthology - Evolution
OrthoDB64131
GeneTree (enSembl)ENSG00000103489
Phylogenetic Trees/Animal Genes : TreeFamXYLT1
HOGENOMQ86Y38
Homologs : HomoloGeneXYLT1
Homology/Alignments : Family Browser (UCSC)XYLT1
Gene fusions - Rearrangements
Fusion : QuiverXYLT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerXYLT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)XYLT1
dbVarXYLT1
ClinVarXYLT1
1000_GenomesXYLT1 
Exome Variant ServerXYLT1
GNOMAD BrowserENSG00000103489
Varsome BrowserXYLT1
Genetic variants : HAPMAP64131
Genomic Variants (DGV)XYLT1 [DGVbeta]
DECIPHERXYLT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisXYLT1 
Mutations
ICGC Data PortalXYLT1 
TCGA Data PortalXYLT1 
Broad Tumor PortalXYLT1
OASIS PortalXYLT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICXYLT1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DXYLT1
Mutations and Diseases : HGMDXYLT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch XYLT1
DgiDB (Drug Gene Interaction Database)XYLT1
DoCM (Curated mutations)XYLT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)XYLT1 (select a term)
intoGenXYLT1
Cancer3DXYLT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM264800    608124    615777   
Orphanet1631    22503   
DisGeNETXYLT1
MedgenXYLT1
Genetic Testing Registry XYLT1
NextProtQ86Y38 [Medical]
TSGene64131
GENETestsXYLT1
Target ValidationXYLT1
Huge Navigator XYLT1 [HugePedia]
snp3D : Map Gene to Disease64131
BioCentury BCIQXYLT1
ClinGenXYLT1
Clinical trials, drugs, therapy
Protein Interactions : CTD64131
Pharm GKB GenePA37973
Clinical trialXYLT1
Miscellaneous
canSAR (ICR)XYLT1 (select the gene name)
HarmonizomeXYLT1
DataMed IndexXYLT1
Probes
Litterature
PubMed48 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXYLT1
EVEXXYLT1
GoPubMedXYLT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:44:03 CEST 2020
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