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XYLT2 (xylosyltransferase 2)

Identity

Alias_namesxylosyltransferase II
Alias_symbol (synonym)XT-II
PXYLT2
Other aliasSOS
XT2
xylT-II
HGNC (Hugo) XYLT2
LocusID (NCBI) 64132
Atlas_Id 42852
Location 17q21.33  [Link to chromosome band 17q21]
Location_base_pair Starts at 50346032 and ends at 50361185 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SPOP (17q21.33) / XYLT2 (17q21.33)SPOP 17q21.33 / XYLT2 17q21.33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t1717q21q21ID102612


External links

Nomenclature
HGNC (Hugo)XYLT2   15517
Cards
Entrez_Gene (NCBI)XYLT2  64132  xylosyltransferase 2
AliasesPXYLT2; SOS; XT-II; XT2; 
xylT-II
GeneCards (Weizmann)XYLT2
Ensembl hg19 (Hinxton)ENSG00000015532 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000015532 [Gene_View]  ENSG00000015532 [Sequence]  chr17:50346032-50361185 [Contig_View]  XYLT2 [Vega]
ICGC DataPortalENSG00000015532
TCGA cBioPortalXYLT2
AceView (NCBI)XYLT2
Genatlas (Paris)XYLT2
WikiGenes64132
SOURCE (Princeton)XYLT2
Genetics Home Reference (NIH)XYLT2
Genomic and cartography
GoldenPath hg38 (UCSC)XYLT2  -     chr17:50346032-50361185 +  17q21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)XYLT2  -     17q21.33   [Description]    (hg19-Feb_2009)
GoldenPathXYLT2 - 17q21.33 [CytoView hg19]  XYLT2 - 17q21.33 [CytoView hg38]
ImmunoBaseENSG00000015532
Mapping of homologs : NCBIXYLT2 [Mapview hg19]  XYLT2 [Mapview hg38]
OMIM264800   605822   608125   
Gene and transcription
Genbank (Entrez)AJ277442 AK299999 AL833210 AY358090 BC017084
RefSeq transcript (Entrez)NM_022167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)XYLT2
Alternative Splicing GalleryENSG00000015532
Gene ExpressionXYLT2 [ NCBI-GEO ]   XYLT2 [ EBI - ARRAY_EXPRESS ]   XYLT2 [ SEEK ]   XYLT2 [ MEM ]
Gene Expression Viewer (FireBrowse)XYLT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)64132
GTEX Portal (Tissue expression)XYLT2
Human Protein AtlasENSG00000015532-XYLT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)XYLT2
DMDM Disease mutations64132
Blocks (Seattle)XYLT2
Human Protein Atlas [tissue]ENSG00000015532-XYLT2 [tissue]
HPRD16286
IPIIPI00432723   IPI00964017   IPI00556347   IPI00965959   IPI00978726   
Protein Interaction databases
FunCoupENSG00000015532
BioGRIDXYLT2
STRING (EMBL)XYLT2
ZODIACXYLT2
Ontologies - Pathways
Huge Navigator XYLT2 [HugePedia]
snp3D : Map Gene to Disease64132
BioCentury BCIQXYLT2
ClinGenXYLT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64132
Chemical/Pharm GKB GenePA37974
Clinical trialXYLT2
Miscellaneous
canSAR (ICR)XYLT2 (select the gene name)
DataMed IndexXYLT2
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineXYLT2
EVEXXYLT2
GoPubMedXYLT2
iHOPXYLT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:16:55 CET 2020

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