Atlas of Genetics and Cytogenetics in Oncology and Haematology

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YEATS2 (YEATS domain containing 2)

Identity

Alias_symbol (synonym)FLJ10201
FLJ12841
FLJ13308
KIAA1197
Other alias-
HGNC (Hugo) YEATS2
LocusID (NCBI) 55689
Atlas_Id 57572
Location 3q27.1  [Link to chromosome band 3q27]
Location_base_pair Starts at 183697818 and ends at 183812625 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FGD4 (12p11.21) / YEATS2 (3q27.1)NDUFV1 (11q13.2) / YEATS2 (3q27.1)PAIP2B (2p13.3) / YEATS2 (3q27.1)
YEATS2 (3q27.1) / SEC62 (3q26.2)YEATS2 (3q27.1) / SIN3B (19p13.11)YEATS2 (3q27.1) / TRIM68 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(3;3)(q26;q27) YEATS2/SEC62

External links

Nomenclature
HGNC (Hugo)YEATS2   25489
Cards
Entrez_Gene (NCBI)YEATS2  55689  YEATS domain containing 2
Aliases
GeneCards (Weizmann)YEATS2
Ensembl hg19 (Hinxton)ENSG00000163872 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163872 [Gene_View]  ENSG00000163872 [Sequence]  chr3:183697818-183812625 [Contig_View]  YEATS2 [Vega]
ICGC DataPortalENSG00000163872
TCGA cBioPortalYEATS2
AceView (NCBI)YEATS2
Genatlas (Paris)YEATS2
WikiGenes55689
SOURCE (Princeton)YEATS2
Genetics Home Reference (NIH)YEATS2
Genomic and cartography
GoldenPath hg38 (UCSC)YEATS2  -     chr3:183697818-183812625 +  3q27.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YEATS2  -     3q27.1   [Description]    (hg19-Feb_2009)
GoldenPathYEATS2 - 3q27.1 [CytoView hg19]  YEATS2 - 3q27.1 [CytoView hg38]
ImmunoBaseENSG00000163872
Mapping of homologs : NCBIYEATS2 [Mapview hg19]  YEATS2 [Mapview hg38]
OMIM613373   
Gene and transcription
Genbank (Entrez)AB033023 AK001063 AK022903 AK023370 AK090720
RefSeq transcript (Entrez)NM_001351369 NM_001351370 NM_001351371 NM_018023
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YEATS2
Cluster EST : UnigeneHs.632575 [ NCBI ]
CGAP (NCI)Hs.632575
Alternative Splicing GalleryENSG00000163872
Gene ExpressionYEATS2 [ NCBI-GEO ]   YEATS2 [ EBI - ARRAY_EXPRESS ]   YEATS2 [ SEEK ]   YEATS2 [ MEM ]
Gene Expression Viewer (FireBrowse)YEATS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55689
GTEX Portal (Tissue expression)YEATS2
Human Protein AtlasENSG00000163872-YEATS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9ULM3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9ULM3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9ULM3
Splice isoforms : SwissVarQ9ULM3
PhosPhoSitePlusQ9ULM3
Domaine pattern : Prosite (Expaxy)YEATS (PS51037)   
Domains : Interpro (EBI)YEAST_sf    YEATS   
Domain families : Pfam (Sanger)YEATS (PF03366)   
Domain families : Pfam (NCBI)pfam03366   
Conserved Domain (NCBI)YEATS2
DMDM Disease mutations55689
Blocks (Seattle)YEATS2
PDB (RSDB)5IQL    5XNV   
PDB Europe5IQL    5XNV   
PDB (PDBSum)5IQL    5XNV   
PDB (IMB)5IQL    5XNV   
Structural Biology KnowledgeBase5IQL    5XNV   
SCOP (Structural Classification of Proteins)5IQL    5XNV   
CATH (Classification of proteins structures)5IQL    5XNV   
SuperfamilyQ9ULM3
Human Protein Atlas [tissue]ENSG00000163872-YEATS2 [tissue]
Peptide AtlasQ9ULM3
IPIIPI00008200   IPI00155568   IPI00978238   IPI00927144   
Protein Interaction databases
DIP (DOE-UCLA)Q9ULM3
IntAct (EBI)Q9ULM3
FunCoupENSG00000163872
BioGRIDYEATS2
STRING (EMBL)YEATS2
ZODIACYEATS2
Ontologies - Pathways
QuickGOQ9ULM3
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  TBP-class protein binding  histone binding  histone H3 acetylation  negative regulation of transcription, DNA-templated  mitotic spindle  modification-dependent protein binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  DNA-binding transcription factor activity, RNA polymerase II-specific  protein binding  Ada2/Gcn5/Ada3 transcription activator complex  TBP-class protein binding  histone binding  histone H3 acetylation  negative regulation of transcription, DNA-templated  mitotic spindle  modification-dependent protein binding  
NDEx NetworkYEATS2
Atlas of Cancer Signalling NetworkYEATS2
Wikipedia pathwaysYEATS2
Orthology - Evolution
OrthoDB55689
GeneTree (enSembl)ENSG00000163872
Phylogenetic Trees/Animal Genes : TreeFamYEATS2
HOGENOMQ9ULM3
Homologs : HomoloGeneYEATS2
Homology/Alignments : Family Browser (UCSC)YEATS2
Gene fusions - Rearrangements
Fusion : QuiverYEATS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYEATS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YEATS2
dbVarYEATS2
ClinVarYEATS2
1000_GenomesYEATS2 
Exome Variant ServerYEATS2
ExAC (Exome Aggregation Consortium)ENSG00000163872
GNOMAD BrowserENSG00000163872
Varsome BrowserYEATS2
Genetic variants : HAPMAP55689
Genomic Variants (DGV)YEATS2 [DGVbeta]
DECIPHERYEATS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYEATS2 
Mutations
ICGC Data PortalYEATS2 
TCGA Data PortalYEATS2 
Broad Tumor PortalYEATS2
OASIS PortalYEATS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYEATS2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYEATS2
Mutations and Diseases : HGMDYEATS2
BioMutasearch YEATS2
DgiDB (Drug Gene Interaction Database)YEATS2
DoCM (Curated mutations)YEATS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YEATS2 (select a term)
intoGenYEATS2
Cancer3DYEATS2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613373   
Orphanet
DisGeNETYEATS2
MedgenYEATS2
Genetic Testing Registry YEATS2
NextProtQ9ULM3 [Medical]
TSGene55689
GENETestsYEATS2
Target ValidationYEATS2
Huge Navigator YEATS2 [HugePedia]
snp3D : Map Gene to Disease55689
BioCentury BCIQYEATS2
ClinGenYEATS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55689
Chemical/Pharm GKB GenePA134922615
Clinical trialYEATS2
Miscellaneous
canSAR (ICR)YEATS2 (select the gene name)
DataMed IndexYEATS2
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYEATS2
EVEXYEATS2
GoPubMedYEATS2
iHOPYEATS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:15:38 CET 2019
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