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YIF1A (Yip1 interacting factor homolog A, membrane trafficking protein)

Identity

Alias_namesYIF1
Yip1 interacting factor homolog (S. cerevisiae)
Alias_symbol (synonym)YIF1P
54TM
FinGER7
Other alias
HGNC (Hugo) YIF1A
LocusID (NCBI) 10897
Atlas_Id 75808
Location 11q13.2  [Link to chromosome band 11q13]
Location_base_pair Starts at 66284580 and ends at 66289167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
YIF1A (11q13.2) / CNIH2 (11q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)YIF1A   16688
Cards
Entrez_Gene (NCBI)YIF1A  10897  Yip1 interacting factor homolog A, membrane trafficking protein
Aliases54TM; FinGER7; YIF1; YIF1P
GeneCards (Weizmann)YIF1A
Ensembl hg19 (Hinxton)ENSG00000174851 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174851 [Gene_View]  ENSG00000174851 [Sequence]  chr11:66284580-66289167 [Contig_View]  YIF1A [Vega]
ICGC DataPortalENSG00000174851
TCGA cBioPortalYIF1A
AceView (NCBI)YIF1A
Genatlas (Paris)YIF1A
WikiGenes10897
SOURCE (Princeton)YIF1A
Genetics Home Reference (NIH)YIF1A
Genomic and cartography
GoldenPath hg38 (UCSC)YIF1A  -     chr11:66284580-66289167 -  11q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YIF1A  -     11q13.2   [Description]    (hg19-Feb_2009)
GoldenPathYIF1A - 11q13.2 [CytoView hg19]  YIF1A - 11q13.2 [CytoView hg38]
ImmunoBaseENSG00000174851
Mapping of homologs : NCBIYIF1A [Mapview hg19]  YIF1A [Mapview hg38]
OMIM611484   
Gene and transcription
Genbank (Entrez)AF004876 AK226003 AK291124 AK308988 AK310521
RefSeq transcript (Entrez)NM_001300861 NM_020470
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YIF1A
Cluster EST : UnigeneHs.446445 [ NCBI ]
CGAP (NCI)Hs.446445
Alternative Splicing GalleryENSG00000174851
Gene ExpressionYIF1A [ NCBI-GEO ]   YIF1A [ EBI - ARRAY_EXPRESS ]   YIF1A [ SEEK ]   YIF1A [ MEM ]
Gene Expression Viewer (FireBrowse)YIF1A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10897
GTEX Portal (Tissue expression)YIF1A
Human Protein AtlasENSG00000174851-YIF1A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95070   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95070  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95070
Splice isoforms : SwissVarO95070
PhosPhoSitePlusO95070
Domains : Interpro (EBI)Yif1_fam   
Domain families : Pfam (Sanger)YIF1 (PF03878)   
Domain families : Pfam (NCBI)pfam03878   
Conserved Domain (NCBI)YIF1A
DMDM Disease mutations10897
Blocks (Seattle)YIF1A
SuperfamilyO95070
Human Protein Atlas [tissue]ENSG00000174851-YIF1A [tissue]
Peptide AtlasO95070
HPRD06755
IPIIPI00007607   IPI00385123   IPI00658174   IPI00658132   IPI00658171   IPI00981249   IPI00981819   IPI00980216   IPI00658141   
Protein Interaction databases
DIP (DOE-UCLA)O95070
IntAct (EBI)O95070
FunCoupENSG00000174851
BioGRIDYIF1A
STRING (EMBL)YIF1A
ZODIACYIF1A
Ontologies - Pathways
QuickGOO95070
Ontology : AmiGOprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  protein transport  COPII-coated ER to Golgi transport vesicle  integral component of Golgi membrane  IRE1-mediated unfolded protein response  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum membrane  endoplasmic reticulum membrane  endoplasmic reticulum-Golgi intermediate compartment  endoplasmic reticulum-Golgi intermediate compartment  ER to Golgi vesicle-mediated transport  protein transport  COPII-coated ER to Golgi transport vesicle  integral component of Golgi membrane  IRE1-mediated unfolded protein response  
NDEx NetworkYIF1A
Atlas of Cancer Signalling NetworkYIF1A
Wikipedia pathwaysYIF1A
Orthology - Evolution
OrthoDB10897
GeneTree (enSembl)ENSG00000174851
Phylogenetic Trees/Animal Genes : TreeFamYIF1A
HOGENOMO95070
Homologs : HomoloGeneYIF1A
Homology/Alignments : Family Browser (UCSC)YIF1A
Gene fusions - Rearrangements
Fusion : QuiverYIF1A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYIF1A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YIF1A
dbVarYIF1A
ClinVarYIF1A
1000_GenomesYIF1A 
Exome Variant ServerYIF1A
ExAC (Exome Aggregation Consortium)ENSG00000174851
GNOMAD BrowserENSG00000174851
Varsome BrowserYIF1A
Genetic variants : HAPMAP10897
Genomic Variants (DGV)YIF1A [DGVbeta]
DECIPHERYIF1A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYIF1A 
Mutations
ICGC Data PortalYIF1A 
TCGA Data PortalYIF1A 
Broad Tumor PortalYIF1A
OASIS PortalYIF1A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICYIF1A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DYIF1A
Mutations and Diseases : HGMDYIF1A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch YIF1A
DgiDB (Drug Gene Interaction Database)YIF1A
DoCM (Curated mutations)YIF1A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YIF1A (select a term)
intoGenYIF1A
Cancer3DYIF1A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611484   
Orphanet
DisGeNETYIF1A
MedgenYIF1A
Genetic Testing Registry YIF1A
NextProtO95070 [Medical]
TSGene10897
GENETestsYIF1A
Target ValidationYIF1A
Huge Navigator YIF1A [HugePedia]
snp3D : Map Gene to Disease10897
BioCentury BCIQYIF1A
ClinGenYIF1A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10897
Chemical/Pharm GKB GenePA134985105
Clinical trialYIF1A
Miscellaneous
canSAR (ICR)YIF1A (select the gene name)
DataMed IndexYIF1A
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYIF1A
EVEXYIF1A
GoPubMedYIF1A
iHOPYIF1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:10 CEST 2019
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