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YJU2 (YJU2 splicing factor homolog)

Identity

Other aliasCCDC94
HGNC (Hugo) YJU2
LocusID (NCBI) 55702
Atlas_Id 80425
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4247070 and ends at 4269093 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)YJU2   25518
Cards
Entrez_Gene (NCBI)YJU2  55702  YJU2 splicing factor homolog
AliasesCCDC94
GeneCards (Weizmann)YJU2
Ensembl hg19 (Hinxton)ENSG00000105248 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105248 [Gene_View]  ENSG00000105248 [Sequence]  chr19:4247070-4269093 [Contig_View]  YJU2 [Vega]
ICGC DataPortalENSG00000105248
TCGA cBioPortalYJU2
AceView (NCBI)YJU2
Genatlas (Paris)YJU2
WikiGenes55702
SOURCE (Princeton)YJU2
Genetics Home Reference (NIH)YJU2
Genomic and cartography
GoldenPath hg38 (UCSC)YJU2  -     chr19:4247070-4269093 +  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)YJU2  -     19p13.3   [Description]    (hg19-Feb_2009)
GoldenPathYJU2 - 19p13.3 [CytoView hg19]  YJU2 - 19p13.3 [CytoView hg38]
ImmunoBaseENSG00000105248
Mapping of homologs : NCBIYJU2 [Mapview hg19]  YJU2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF091080 AK001236 AK023988 BC000561
RefSeq transcript (Entrez)NM_018074
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)YJU2
Cluster EST : UnigeneHs.21811 [ NCBI ]
CGAP (NCI)Hs.21811
Alternative Splicing GalleryENSG00000105248
Gene ExpressionYJU2 [ NCBI-GEO ]   YJU2 [ EBI - ARRAY_EXPRESS ]   YJU2 [ SEEK ]   YJU2 [ MEM ]
Gene Expression Viewer (FireBrowse)YJU2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55702
GTEX Portal (Tissue expression)YJU2
Human Protein AtlasENSG00000105248-YJU2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BW85   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BW85  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BW85
Splice isoforms : SwissVarQ9BW85
PhosPhoSitePlusQ9BW85
Domains : Interpro (EBI)CWC16   
Domain families : Pfam (Sanger)DUF572 (PF04502)   
Domain families : Pfam (NCBI)pfam04502   
Conserved Domain (NCBI)YJU2
DMDM Disease mutations55702
Blocks (Seattle)YJU2
SuperfamilyQ9BW85
Human Protein Atlas [tissue]ENSG00000105248-YJU2 [tissue]
Peptide AtlasQ9BW85
IPIIPI00306471   
Protein Interaction databases
DIP (DOE-UCLA)Q9BW85
IntAct (EBI)Q9BW85
FunCoupENSG00000105248
BioGRIDYJU2
STRING (EMBL)YJU2
ZODIACYJU2
Ontologies - Pathways
QuickGOQ9BW85
Ontology : AmiGOprotein binding  mRNA processing  RNA splicing  negative regulation of DNA damage response, signal transduction by p53 class mediator  metal ion binding  U2-type catalytic step 1 spliceosome  
Ontology : EGO-EBIprotein binding  mRNA processing  RNA splicing  negative regulation of DNA damage response, signal transduction by p53 class mediator  metal ion binding  U2-type catalytic step 1 spliceosome  
NDEx NetworkYJU2
Atlas of Cancer Signalling NetworkYJU2
Wikipedia pathwaysYJU2
Orthology - Evolution
OrthoDB55702
GeneTree (enSembl)ENSG00000105248
Phylogenetic Trees/Animal Genes : TreeFamYJU2
HOGENOMQ9BW85
Homologs : HomoloGeneYJU2
Homology/Alignments : Family Browser (UCSC)YJU2
Gene fusions - Rearrangements
Fusion : QuiverYJU2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerYJU2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)YJU2
dbVarYJU2
ClinVarYJU2
1000_GenomesYJU2 
Exome Variant ServerYJU2
ExAC (Exome Aggregation Consortium)ENSG00000105248
GNOMAD BrowserENSG00000105248
Varsome BrowserYJU2
Genetic variants : HAPMAP55702
Genomic Variants (DGV)YJU2 [DGVbeta]
DECIPHERYJU2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisYJU2 
Mutations
ICGC Data PortalYJU2 
TCGA Data PortalYJU2 
Broad Tumor PortalYJU2
OASIS PortalYJU2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDYJU2
BioMutasearch YJU2
DgiDB (Drug Gene Interaction Database)YJU2
DoCM (Curated mutations)YJU2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)YJU2 (select a term)
intoGenYJU2
Cancer3DYJU2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETYJU2
MedgenYJU2
Genetic Testing Registry YJU2
NextProtQ9BW85 [Medical]
TSGene55702
GENETestsYJU2
Target ValidationYJU2
Huge Navigator YJU2 [HugePedia]
snp3D : Map Gene to Disease55702
BioCentury BCIQYJU2
ClinGenYJU2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55702
Chemical/Pharm GKB GenePA144596461
Clinical trialYJU2
Miscellaneous
canSAR (ICR)YJU2 (select the gene name)
DataMed IndexYJU2
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineYJU2
EVEXYJU2
GoPubMedYJU2
iHOPYJU2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:11 CEST 2019

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