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ZC3HAV1 (zinc finger CCCH-type containing, antiviral 1)

Identity

Alias_symbol (synonym)ZAP
FLB6421
FLJ13288
MGC48898
ZC3HDC2
ZC3H2
PARP13
Other aliasARTD13
HGNC (Hugo) ZC3HAV1
LocusID (NCBI) 56829
Atlas_Id 57769
Location 7q34  [Link to chromosome band 7q34]
Location_base_pair Starts at 139060338 and ends at 139109719 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABL2 (1q25.2) / ZC3HAV1 (7q34)ITPKB (1q42.12) / ZC3HAV1 (7q34)MGEA5 (10q24.32) / ZC3HAV1 (7q34)
TNPO3 (7q32.1) / ZC3HAV1 (7q34)ZC3HAV1 (7q34) / ABL2 (1q25.2)ZC3HAV1 (7q34) / BRAF (7q34)
ZC3HAV1 (7q34) / CTSS (1q21.3)ZC3HAV1 (7q34) / ITPKB (1q42.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas)

Leukemias TL_t0107q25q34ID3341 TL_t0713q34q14ID3342


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0107q42q34ID104507 TT_t0107q42q34ID104508


External links

Nomenclature
HGNC (Hugo)ZC3HAV1   23721
Cards
Entrez_Gene (NCBI)ZC3HAV1  56829  zinc finger CCCH-type containing, antiviral 1
AliasesARTD13; FLB6421; PARP13; ZAP; 
ZC3H2; ZC3HDC2
GeneCards (Weizmann)ZC3HAV1
Ensembl hg19 (Hinxton)ENSG00000105939 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105939 [Gene_View]  ENSG00000105939 [Sequence]  chr7:139060338-139109719 [Contig_View]  ZC3HAV1 [Vega]
ICGC DataPortalENSG00000105939
TCGA cBioPortalZC3HAV1
AceView (NCBI)ZC3HAV1
Genatlas (Paris)ZC3HAV1
WikiGenes56829
SOURCE (Princeton)ZC3HAV1
Genetics Home Reference (NIH)ZC3HAV1
Genomic and cartography
GoldenPath hg38 (UCSC)ZC3HAV1  -     chr7:139060338-139109719 -  7q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZC3HAV1  -     7q34   [Description]    (hg19-Feb_2009)
GoldenPathZC3HAV1 - 7q34 [CytoView hg19]  ZC3HAV1 - 7q34 [CytoView hg38]
ImmunoBaseENSG00000105939
Mapping of homologs : NCBIZC3HAV1 [Mapview hg19]  ZC3HAV1 [Mapview hg38]
OMIM607312   
Gene and transcription
Genbank (Entrez)AF138863 AI133088 AK023350 AK055851 AK098308
RefSeq transcript (Entrez)NM_001363491 NM_020119 NM_024625
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZC3HAV1
Alternative Splicing GalleryENSG00000105939
Gene ExpressionZC3HAV1 [ NCBI-GEO ]   ZC3HAV1 [ EBI - ARRAY_EXPRESS ]   ZC3HAV1 [ SEEK ]   ZC3HAV1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZC3HAV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)56829
GTEX Portal (Tissue expression)ZC3HAV1
Human Protein AtlasENSG00000105939-ZC3HAV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZC3HAV1
DMDM Disease mutations56829
Blocks (Seattle)ZC3HAV1
Human Protein Atlas [tissue]ENSG00000105939-ZC3HAV1 [tissue]
IPIIPI00410067   IPI00332936   IPI00410070   IPI00410071   IPI00981976   IPI00410069   
Protein Interaction databases
FunCoupENSG00000105939
BioGRIDZC3HAV1
STRING (EMBL)ZC3HAV1
ZODIACZC3HAV1
Ontologies - Pathways
Huge Navigator ZC3HAV1 [HugePedia]
snp3D : Map Gene to Disease56829
BioCentury BCIQZC3HAV1
ClinGenZC3HAV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56829
Chemical/Pharm GKB GenePA134944289
Clinical trialZC3HAV1
Miscellaneous
canSAR (ICR)ZC3HAV1 (select the gene name)
DataMed IndexZC3HAV1
Probes
Litterature
PubMed116 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZC3HAV1
EVEXZC3HAV1
GoPubMedZC3HAV1
iHOPZC3HAV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:17:09 CET 2020

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