Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZCWPW1 (zinc finger CW-type and PWWP domain containing 1)

Identity

Alias_nameszinc finger, CW-type with PWWP domain 1
Alias_symbol (synonym)FLJ10057
DKFZp434N0510
ZCW1
Other alias
HGNC (Hugo) ZCWPW1
LocusID (NCBI) 55063
Atlas_Id 75902
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100400872 and ends at 100428808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZCWPW1   23486
Cards
Entrez_Gene (NCBI)ZCWPW1  55063  zinc finger CW-type and PWWP domain containing 1
AliasesZCW1
GeneCards (Weizmann)ZCWPW1
Ensembl hg19 (Hinxton)ENSG00000078487 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000078487 [Gene_View]  ENSG00000078487 [Sequence]  chr7:100400872-100428808 [Contig_View]  ZCWPW1 [Vega]
ICGC DataPortalENSG00000078487
TCGA cBioPortalZCWPW1
AceView (NCBI)ZCWPW1
Genatlas (Paris)ZCWPW1
WikiGenes55063
SOURCE (Princeton)ZCWPW1
Genetics Home Reference (NIH)ZCWPW1
Genomic and cartography
GoldenPath hg38 (UCSC)ZCWPW1  -     chr7:100400872-100428808 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZCWPW1  -     7q22.1   [Description]    (hg19-Feb_2009)
GoldenPathZCWPW1 - 7q22.1 [CytoView hg19]  ZCWPW1 - 7q22.1 [CytoView hg38]
ImmunoBaseENSG00000078487
genome Data Viewer NCBIZCWPW1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000919 AK093038 AK299989 AK300745 AK302108
RefSeq transcript (Entrez)NM_001258008 NM_017984
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZCWPW1
Alternative Splicing GalleryENSG00000078487
Gene ExpressionZCWPW1 [ NCBI-GEO ]   ZCWPW1 [ EBI - ARRAY_EXPRESS ]   ZCWPW1 [ SEEK ]   ZCWPW1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZCWPW1 [ Firebrowse - Broad ]
GenevisibleExpression of ZCWPW1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55063
GTEX Portal (Tissue expression)ZCWPW1
Human Protein AtlasENSG00000078487-ZCWPW1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0M4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0M4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0M4
Splice isoforms : SwissVarQ9H0M4
PhosPhoSitePlusQ9H0M4
Domaine pattern : Prosite (Expaxy)PWWP (PS50812)    ZF_CW (PS51050)   
Domains : Interpro (EBI)PWWP_dom    ZCWPW1/ZCWPW2    Znf_CW   
Domain families : Pfam (Sanger)PWWP (PF00855)    zf-CW (PF07496)   
Domain families : Pfam (NCBI)pfam00855    pfam07496   
Domain families : Smart (EMBL)PWWP (SM00293)  
Conserved Domain (NCBI)ZCWPW1
DMDM Disease mutations55063
Blocks (Seattle)ZCWPW1
PDB (RSDB)2E61    2RR4   
PDB Europe2E61    2RR4   
PDB (PDBSum)2E61    2RR4   
PDB (IMB)2E61    2RR4   
Structural Biology KnowledgeBase2E61    2RR4   
SCOP (Structural Classification of Proteins)2E61    2RR4   
CATH (Classification of proteins structures)2E61    2RR4   
SuperfamilyQ9H0M4
Human Protein Atlas [tissue]ENSG00000078487-ZCWPW1 [tissue]
Peptide AtlasQ9H0M4
HPRD15706
IPIIPI00300244   IPI00943311   IPI00455909   IPI00909132   IPI00908561   IPI00748427   IPI00017468   IPI00945809   IPI00946158   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0M4
IntAct (EBI)Q9H0M4
FunCoupENSG00000078487
BioGRIDZCWPW1
STRING (EMBL)ZCWPW1
ZODIACZCWPW1
Ontologies - Pathways
QuickGOQ9H0M4
Ontology : AmiGOzinc ion binding  
Ontology : EGO-EBIzinc ion binding  
NDEx NetworkZCWPW1
Atlas of Cancer Signalling NetworkZCWPW1
Wikipedia pathwaysZCWPW1
Orthology - Evolution
OrthoDB55063
GeneTree (enSembl)ENSG00000078487
Phylogenetic Trees/Animal Genes : TreeFamZCWPW1
HOGENOMQ9H0M4
Homologs : HomoloGeneZCWPW1
Homology/Alignments : Family Browser (UCSC)ZCWPW1
Gene fusions - Rearrangements
Fusion : QuiverZCWPW1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZCWPW1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZCWPW1
dbVarZCWPW1
ClinVarZCWPW1
1000_GenomesZCWPW1 
Exome Variant ServerZCWPW1
GNOMAD BrowserENSG00000078487
Varsome BrowserZCWPW1
Genetic variants : HAPMAP55063
Genomic Variants (DGV)ZCWPW1 [DGVbeta]
DECIPHERZCWPW1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZCWPW1 
Mutations
ICGC Data PortalZCWPW1 
TCGA Data PortalZCWPW1 
Broad Tumor PortalZCWPW1
OASIS PortalZCWPW1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZCWPW1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZCWPW1
Mutations and Diseases : HGMDZCWPW1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZCWPW1
DgiDB (Drug Gene Interaction Database)ZCWPW1
DoCM (Curated mutations)ZCWPW1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZCWPW1 (select a term)
intoGenZCWPW1
Cancer3DZCWPW1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZCWPW1
MedgenZCWPW1
Genetic Testing Registry ZCWPW1
NextProtQ9H0M4 [Medical]
TSGene55063
GENETestsZCWPW1
Target ValidationZCWPW1
Huge Navigator ZCWPW1 [HugePedia]
snp3D : Map Gene to Disease55063
BioCentury BCIQZCWPW1
ClinGenZCWPW1
Clinical trials, drugs, therapy
Protein Interactions : CTD55063
Pharm GKB GenePA134913967
Clinical trialZCWPW1
Miscellaneous
canSAR (ICR)ZCWPW1 (select the gene name)
HarmonizomeZCWPW1
DataMed IndexZCWPW1
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZCWPW1
EVEXZCWPW1
GoPubMedZCWPW1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:44:21 CEST 2020
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