Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZDHHC13 (zinc finger DHHC-type containing 13)

Identity

Alias_symbol (synonym)FLJ10852
FLJ10941
HIP14L
Other aliasHIP3RP
HGNC (Hugo) ZDHHC13
LocusID (NCBI) 54503
Atlas_Id 54795
Location 11p15.1  [Link to chromosome band 11p15]
Location_base_pair Starts at 19117145 and ends at 19176420 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BACH2 (6q15) / ZDHHC13 (11p15.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;11)(q15;p15) BACH2/ZDHHC13


External links

Nomenclature
HGNC (Hugo)ZDHHC13   18413
Cards
Entrez_Gene (NCBI)ZDHHC13  54503  zinc finger DHHC-type containing 13
AliasesHIP14L; HIP3RP
GeneCards (Weizmann)ZDHHC13
Ensembl hg19 (Hinxton)ENSG00000177054 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177054 [Gene_View]  ENSG00000177054 [Sequence]  chr11:19117145-19176420 [Contig_View]  ZDHHC13 [Vega]
ICGC DataPortalENSG00000177054
TCGA cBioPortalZDHHC13
AceView (NCBI)ZDHHC13
Genatlas (Paris)ZDHHC13
WikiGenes54503
SOURCE (Princeton)ZDHHC13
Genetics Home Reference (NIH)ZDHHC13
Genomic and cartography
GoldenPath hg38 (UCSC)ZDHHC13  -     chr11:19117145-19176420 +  11p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZDHHC13  -     11p15.1   [Description]    (hg19-Feb_2009)
GoldenPathZDHHC13 - 11p15.1 [CytoView hg19]  ZDHHC13 - 11p15.1 [CytoView hg38]
ImmunoBaseENSG00000177054
Mapping of homologs : NCBIZDHHC13 [Mapview hg19]  ZDHHC13 [Mapview hg38]
OMIM612815   
Gene and transcription
Genbank (Entrez)AB024495 AB097014 AB097027 AK001714 AK001803
RefSeq transcript (Entrez)NM_001001483 NM_019028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZDHHC13
Cluster EST : UnigeneHs.188569 [ NCBI ]
CGAP (NCI)Hs.188569
Alternative Splicing GalleryENSG00000177054
Gene ExpressionZDHHC13 [ NCBI-GEO ]   ZDHHC13 [ EBI - ARRAY_EXPRESS ]   ZDHHC13 [ SEEK ]   ZDHHC13 [ MEM ]
Gene Expression Viewer (FireBrowse)ZDHHC13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54503
GTEX Portal (Tissue expression)ZDHHC13
Human Protein AtlasENSG00000177054-ZDHHC13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUH4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUH4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUH4
Splice isoforms : SwissVarQ8IUH4
PhosPhoSitePlusQ8IUH4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    DHHC (PS50216)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    Palmitoyltrfase_DHHC    ZDHHC13   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    DHHC (PF01529)   
Domain families : Pfam (NCBI)pfam12796    pfam01529   
Domain families : Smart (EMBL)ANK (SM00248)  
Conserved Domain (NCBI)ZDHHC13
DMDM Disease mutations54503
Blocks (Seattle)ZDHHC13
SuperfamilyQ8IUH4
Human Protein Atlas [tissue]ENSG00000177054-ZDHHC13 [tissue]
Peptide AtlasQ8IUH4
HPRD15710
IPIIPI00410663   IPI00410664   IPI00410665   IPI00982711   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUH4
IntAct (EBI)Q8IUH4
FunCoupENSG00000177054
BioGRIDZDHHC13
STRING (EMBL)ZDHHC13
ZODIACZDHHC13
Ontologies - Pathways
QuickGOQ8IUH4
Ontology : AmiGOGolgi membrane  endoplasmic reticulum  magnesium ion transmembrane transporter activity  membrane  integral component of membrane  palmitoyltransferase activity  protein-cysteine S-palmitoyltransferase activity  cytoplasmic vesicle membrane  Golgi-associated vesicle membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  magnesium ion transmembrane transport  
Ontology : EGO-EBIGolgi membrane  endoplasmic reticulum  magnesium ion transmembrane transporter activity  membrane  integral component of membrane  palmitoyltransferase activity  protein-cysteine S-palmitoyltransferase activity  cytoplasmic vesicle membrane  Golgi-associated vesicle membrane  positive regulation of I-kappaB kinase/NF-kappaB signaling  magnesium ion transmembrane transport  
NDEx NetworkZDHHC13
Atlas of Cancer Signalling NetworkZDHHC13
Wikipedia pathwaysZDHHC13
Orthology - Evolution
OrthoDB54503
GeneTree (enSembl)ENSG00000177054
Phylogenetic Trees/Animal Genes : TreeFamZDHHC13
HOGENOMQ8IUH4
Homologs : HomoloGeneZDHHC13
Homology/Alignments : Family Browser (UCSC)ZDHHC13
Gene fusions - Rearrangements
Fusion : MitelmanBACH2/ZDHHC13 [6q15/11p15.1]  [t(6;11)(q15;p15)]  
Fusion : QuiverZDHHC13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZDHHC13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZDHHC13
dbVarZDHHC13
ClinVarZDHHC13
1000_GenomesZDHHC13 
Exome Variant ServerZDHHC13
ExAC (Exome Aggregation Consortium)ENSG00000177054
GNOMAD BrowserENSG00000177054
Varsome BrowserZDHHC13
Genetic variants : HAPMAP54503
Genomic Variants (DGV)ZDHHC13 [DGVbeta]
DECIPHERZDHHC13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZDHHC13 
Mutations
ICGC Data PortalZDHHC13 
TCGA Data PortalZDHHC13 
Broad Tumor PortalZDHHC13
OASIS PortalZDHHC13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZDHHC13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZDHHC13
Mutations and Diseases : HGMDZDHHC13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZDHHC13
DgiDB (Drug Gene Interaction Database)ZDHHC13
DoCM (Curated mutations)ZDHHC13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZDHHC13 (select a term)
intoGenZDHHC13
Cancer3DZDHHC13(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612815   
Orphanet
DisGeNETZDHHC13
MedgenZDHHC13
Genetic Testing Registry ZDHHC13
NextProtQ8IUH4 [Medical]
TSGene54503
GENETestsZDHHC13
Target ValidationZDHHC13
Huge Navigator ZDHHC13 [HugePedia]
snp3D : Map Gene to Disease54503
BioCentury BCIQZDHHC13
ClinGenZDHHC13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54503
Chemical/Pharm GKB GenePA134955878
Clinical trialZDHHC13
Miscellaneous
canSAR (ICR)ZDHHC13 (select the gene name)
DataMed IndexZDHHC13
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZDHHC13
EVEXZDHHC13
GoPubMedZDHHC13
iHOPZDHHC13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:15:53 CET 2019

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