Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZFP30 (ZFP30 zinc finger protein)

Identity

Alias_nameszinc finger protein 30 homolog (mouse)
Alias_symbol (synonym)ZNF745
KIAA0961
Other alias
HGNC (Hugo) ZFP30
LocusID (NCBI) 22835
Atlas_Id 75935
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 37631009 and ends at 37655465 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZFP30 (19q13.12) / CEACAM7 (19q13.2)ZFP30 (19q13.12) / PRX (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ZFP30/CEACAM7 (19q13)
ZFP30/PRX (19q13)

External links

Nomenclature
HGNC (Hugo)ZFP30   29555
Cards
Entrez_Gene (NCBI)ZFP30  22835  ZFP30 zinc finger protein
AliasesZNF745
GeneCards (Weizmann)ZFP30
Ensembl hg19 (Hinxton)ENSG00000120784 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120784 [Gene_View]  ENSG00000120784 [Sequence]  chr19:37631009-37655465 [Contig_View]  ZFP30 [Vega]
ICGC DataPortalENSG00000120784
TCGA cBioPortalZFP30
AceView (NCBI)ZFP30
Genatlas (Paris)ZFP30
WikiGenes22835
SOURCE (Princeton)ZFP30
Genetics Home Reference (NIH)ZFP30
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP30  -     chr19:37631009-37655465 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP30  -     19q13.12   [Description]    (hg19-Feb_2009)
GoldenPathZFP30 - 19q13.12 [CytoView hg19]  ZFP30 - 19q13.12 [CytoView hg38]
ImmunoBaseENSG00000120784
genome Data Viewer NCBIZFP30 [Mapview hg19]  
OMIM617317   
Gene and transcription
Genbank (Entrez)AB023178 AI377404 AK297301 BC041087 BC050542
RefSeq transcript (Entrez)NM_001320666 NM_001320667 NM_001320668 NM_001320669 NM_001320670 NM_001320671 NM_014898
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP30
Alternative Splicing GalleryENSG00000120784
Gene ExpressionZFP30 [ NCBI-GEO ]   ZFP30 [ EBI - ARRAY_EXPRESS ]   ZFP30 [ SEEK ]   ZFP30 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP30 [ Firebrowse - Broad ]
GenevisibleExpression of ZFP30 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)22835
GTEX Portal (Tissue expression)ZFP30
Human Protein AtlasENSG00000120784-ZFP30 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2G7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2G7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2G7
Splice isoforms : SwissVarQ9Y2G7
PhosPhoSitePlusQ9Y2G7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP30
DMDM Disease mutations22835
Blocks (Seattle)ZFP30
SuperfamilyQ9Y2G7
Human Protein Atlas [tissue]ENSG00000120784-ZFP30 [tissue]
Peptide AtlasQ9Y2G7
HPRD17201
IPIIPI00032142   IPI00909233   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2G7
IntAct (EBI)Q9Y2G7
FunCoupENSG00000120784
BioGRIDZFP30
STRING (EMBL)ZFP30
ZODIACZFP30
Ontologies - Pathways
QuickGOQ9Y2G7
Ontology : AmiGODNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP30
Atlas of Cancer Signalling NetworkZFP30
Wikipedia pathwaysZFP30
Orthology - Evolution
OrthoDB22835
GeneTree (enSembl)ENSG00000120784
Phylogenetic Trees/Animal Genes : TreeFamZFP30
HOGENOMQ9Y2G7
Homologs : HomoloGeneZFP30
Homology/Alignments : Family Browser (UCSC)ZFP30
Gene fusions - Rearrangements
Fusion : QuiverZFP30
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP30
dbVarZFP30
ClinVarZFP30
1000_GenomesZFP30 
Exome Variant ServerZFP30
GNOMAD BrowserENSG00000120784
Varsome BrowserZFP30
Genetic variants : HAPMAP22835
Genomic Variants (DGV)ZFP30 [DGVbeta]
DECIPHERZFP30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP30 
Mutations
ICGC Data PortalZFP30 
TCGA Data PortalZFP30 
Broad Tumor PortalZFP30
OASIS PortalZFP30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP30  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZFP30
Mutations and Diseases : HGMDZFP30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP30
DgiDB (Drug Gene Interaction Database)ZFP30
DoCM (Curated mutations)ZFP30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP30 (select a term)
intoGenZFP30
Cancer3DZFP30(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617317   
Orphanet
DisGeNETZFP30
MedgenZFP30
Genetic Testing Registry ZFP30
NextProtQ9Y2G7 [Medical]
TSGene22835
GENETestsZFP30
Target ValidationZFP30
Huge Navigator ZFP30 [HugePedia]
snp3D : Map Gene to Disease22835
BioCentury BCIQZFP30
ClinGenZFP30
Clinical trials, drugs, therapy
Protein Interactions : CTD22835
Pharm GKB GenePA143485675
Clinical trialZFP30
Miscellaneous
canSAR (ICR)ZFP30 (select the gene name)
HarmonizomeZFP30
DataMed IndexZFP30
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP30
EVEXZFP30
GoPubMedZFP30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:44:27 CEST 2020
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