Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZIK1 (zinc finger protein interacting with K protein 1)

Identity

Alias_nameszinc finger protein interacting with K protein 1 homolog (mouse)
Alias_symbol (synonym)ZNF762
Other alias
HGNC (Hugo) ZIK1
LocusID (NCBI) 284307
Atlas_Id 75961
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57583976 and ends at 57593890 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIK1   33104
Cards
Entrez_Gene (NCBI)ZIK1  284307  zinc finger protein interacting with K protein 1
AliasesZNF762
GeneCards (Weizmann)ZIK1
Ensembl hg19 (Hinxton)ENSG00000171649 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000171649 [Gene_View]  ENSG00000171649 [Sequence]  chr19:57583976-57593890 [Contig_View]  ZIK1 [Vega]
ICGC DataPortalENSG00000171649
TCGA cBioPortalZIK1
AceView (NCBI)ZIK1
Genatlas (Paris)ZIK1
WikiGenes284307
SOURCE (Princeton)ZIK1
Genetics Home Reference (NIH)ZIK1
Genomic and cartography
GoldenPath hg38 (UCSC)ZIK1  -     chr19:57583976-57593890 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZIK1  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZIK1 - 19q13.43 [CytoView hg19]  ZIK1 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000171649
Mapping of homologs : NCBIZIK1 [Mapview hg19]  ZIK1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092538 AK128340 BC047299 BC103957 BC103958
RefSeq transcript (Entrez)NM_001010879 NM_001321145 NM_001321146 NM_001321147
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZIK1
Cluster EST : UnigeneHs.454830 [ NCBI ]
CGAP (NCI)Hs.454830
Alternative Splicing GalleryENSG00000171649
Gene ExpressionZIK1 [ NCBI-GEO ]   ZIK1 [ EBI - ARRAY_EXPRESS ]   ZIK1 [ SEEK ]   ZIK1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIK1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284307
GTEX Portal (Tissue expression)ZIK1
Human Protein AtlasENSG00000171649-ZIK1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SY52   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SY52  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SY52
Splice isoforms : SwissVarQ3SY52
PhosPhoSitePlusQ3SY52
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZIK1
DMDM Disease mutations284307
Blocks (Seattle)ZIK1
SuperfamilyQ3SY52
Human Protein Atlas [tissue]ENSG00000171649-ZIK1 [tissue]
Peptide AtlasQ3SY52
HPRD18321
IPIIPI00305608   IPI00845342   IPI00477377   IPI00845247   
Protein Interaction databases
DIP (DOE-UCLA)Q3SY52
IntAct (EBI)Q3SY52
FunCoupENSG00000171649
BioGRIDZIK1
STRING (EMBL)ZIK1
ZODIACZIK1
Ontologies - Pathways
QuickGOQ3SY52
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZIK1
Atlas of Cancer Signalling NetworkZIK1
Wikipedia pathwaysZIK1
Orthology - Evolution
OrthoDB284307
GeneTree (enSembl)ENSG00000171649
Phylogenetic Trees/Animal Genes : TreeFamZIK1
HOGENOMQ3SY52
Homologs : HomoloGeneZIK1
Homology/Alignments : Family Browser (UCSC)ZIK1
Gene fusions - Rearrangements
Fusion : QuiverZIK1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZIK1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIK1
dbVarZIK1
ClinVarZIK1
1000_GenomesZIK1 
Exome Variant ServerZIK1
ExAC (Exome Aggregation Consortium)ENSG00000171649
GNOMAD BrowserENSG00000171649
Varsome BrowserZIK1
Genetic variants : HAPMAP284307
Genomic Variants (DGV)ZIK1 [DGVbeta]
DECIPHERZIK1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZIK1 
Mutations
ICGC Data PortalZIK1 
TCGA Data PortalZIK1 
Broad Tumor PortalZIK1
OASIS PortalZIK1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIK1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZIK1
Mutations and Diseases : HGMDZIK1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIK1
DgiDB (Drug Gene Interaction Database)ZIK1
DoCM (Curated mutations)ZIK1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIK1 (select a term)
intoGenZIK1
Cancer3DZIK1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZIK1
MedgenZIK1
Genetic Testing Registry ZIK1
NextProtQ3SY52 [Medical]
TSGene284307
GENETestsZIK1
Target ValidationZIK1
Huge Navigator ZIK1 [HugePedia]
snp3D : Map Gene to Disease284307
BioCentury BCIQZIK1
ClinGenZIK1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284307
Chemical/Pharm GKB GenePA162409747
Clinical trialZIK1
Miscellaneous
canSAR (ICR)ZIK1 (select the gene name)
DataMed IndexZIK1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIK1
EVEXZIK1
GoPubMedZIK1
iHOPZIK1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:34 CEST 2019

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