Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF107 (zinc finger protein 107)

Identity

Alias_namesZNF588
zinc finger protein 588
zinc finger protein 107 (Y8)
Alias_symbol (synonym)ZFD25
smap-7
Other aliasY8
HGNC (Hugo) ZNF107
LocusID (NCBI) 51427
Atlas_Id 75985
Location 7q11.21  [Link to chromosome band 7q11]
Location_base_pair Starts at 64666083 and ends at 64711582 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ZNF107 (7q11.21) / DDX39B (6p21.33)ZNF107 (7q11.21) / FAM83D (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF107   12887
Cards
Entrez_Gene (NCBI)ZNF107  51427  zinc finger protein 107
AliasesY8; ZFD25; ZNF588; smap-7
GeneCards (Weizmann)ZNF107
Ensembl hg19 (Hinxton)ENSG00000196247 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196247 [Gene_View]  ENSG00000196247 [Sequence]  chr7:64666083-64711582 [Contig_View]  ZNF107 [Vega]
ICGC DataPortalENSG00000196247
TCGA cBioPortalZNF107
AceView (NCBI)ZNF107
Genatlas (Paris)ZNF107
WikiGenes51427
SOURCE (Princeton)ZNF107
Genetics Home Reference (NIH)ZNF107
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF107  -     chr7:64666083-64711582 +  7q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF107  -     7q11.21   [Description]    (hg19-Feb_2009)
GoldenPathZNF107 - 7q11.21 [CytoView hg19]  ZNF107 - 7q11.21 [CytoView hg38]
ImmunoBaseENSG00000196247
Mapping of homologs : NCBIZNF107 [Mapview hg19]  ZNF107 [Mapview hg38]
OMIM603989   
Gene and transcription
Genbank (Entrez)AB014735 AB027251 AK303931 BC017809 BC047243
RefSeq transcript (Entrez)NM_001013746 NM_001282359 NM_001282360 NM_016220
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF107
Cluster EST : UnigeneHs.732661 [ NCBI ]
CGAP (NCI)Hs.732661
Alternative Splicing GalleryENSG00000196247
Gene ExpressionZNF107 [ NCBI-GEO ]   ZNF107 [ EBI - ARRAY_EXPRESS ]   ZNF107 [ SEEK ]   ZNF107 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF107 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51427
GTEX Portal (Tissue expression)ZNF107
Human Protein AtlasENSG00000196247-ZNF107 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UII5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UII5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UII5
Splice isoforms : SwissVarQ9UII5
PhosPhoSitePlusQ9UII5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF107
DMDM Disease mutations51427
Blocks (Seattle)ZNF107
SuperfamilyQ9UII5
Human Protein Atlas [tissue]ENSG00000196247-ZNF107 [tissue]
Peptide AtlasQ9UII5
HPRD18669
IPIIPI00008208   IPI00936311   
Protein Interaction databases
DIP (DOE-UCLA)Q9UII5
IntAct (EBI)Q9UII5
FunCoupENSG00000196247
BioGRIDZNF107
STRING (EMBL)ZNF107
ZODIACZNF107
Ontologies - Pathways
QuickGOQ9UII5
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  molecular_function  DNA binding  cellular_component  nucleus  regulation of transcription by RNA polymerase II  biological_process  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  molecular_function  DNA binding  cellular_component  nucleus  regulation of transcription by RNA polymerase II  biological_process  metal ion binding  
NDEx NetworkZNF107
Atlas of Cancer Signalling NetworkZNF107
Wikipedia pathwaysZNF107
Orthology - Evolution
OrthoDB51427
GeneTree (enSembl)ENSG00000196247
Phylogenetic Trees/Animal Genes : TreeFamZNF107
HOGENOMQ9UII5
Homologs : HomoloGeneZNF107
Homology/Alignments : Family Browser (UCSC)ZNF107
Gene fusions - Rearrangements
Fusion : QuiverZNF107
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF107 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF107
dbVarZNF107
ClinVarZNF107
1000_GenomesZNF107 
Exome Variant ServerZNF107
ExAC (Exome Aggregation Consortium)ENSG00000196247
GNOMAD BrowserENSG00000196247
Varsome BrowserZNF107
Genetic variants : HAPMAP51427
Genomic Variants (DGV)ZNF107 [DGVbeta]
DECIPHERZNF107 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF107 
Mutations
ICGC Data PortalZNF107 
TCGA Data PortalZNF107 
Broad Tumor PortalZNF107
OASIS PortalZNF107 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF107  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF107
Mutations and Diseases : HGMDZNF107
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF107
DgiDB (Drug Gene Interaction Database)ZNF107
DoCM (Curated mutations)ZNF107 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF107 (select a term)
intoGenZNF107
Cancer3DZNF107(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603989   
Orphanet
DisGeNETZNF107
MedgenZNF107
Genetic Testing Registry ZNF107
NextProtQ9UII5 [Medical]
TSGene51427
GENETestsZNF107
Target ValidationZNF107
Huge Navigator ZNF107 [HugePedia]
snp3D : Map Gene to Disease51427
BioCentury BCIQZNF107
ClinGenZNF107
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51427
Chemical/Pharm GKB GenePA37476
Clinical trialZNF107
Miscellaneous
canSAR (ICR)ZNF107 (select the gene name)
DataMed IndexZNF107
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF107
EVEXZNF107
GoPubMedZNF107
iHOPZNF107
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:39 CEST 2019
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