Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZNF169 (zinc finger protein 169)

Identity

Alias_symbol (synonym)MGC51961
Other alias-
HGNC (Hugo) ZNF169
LocusID (NCBI) 169841
Atlas_Id 76006
Location 9q22.32  [Link to chromosome band 9q22]
Location_base_pair Starts at 94259266 and ends at 94301829 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MMP2 (16q12.2) / ZNF169 (9q22.32)ZNF169 (9q22.32) / RP11-371E8.4 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZNF169   12957
Cards
Entrez_Gene (NCBI)ZNF169  169841  zinc finger protein 169
Aliases
GeneCards (Weizmann)ZNF169
Ensembl hg19 (Hinxton)ENSG00000175787 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000175787 [Gene_View]  ENSG00000175787 [Sequence]  chr9:94259266-94301829 [Contig_View]  ZNF169 [Vega]
ICGC DataPortalENSG00000175787
TCGA cBioPortalZNF169
AceView (NCBI)ZNF169
Genatlas (Paris)ZNF169
WikiGenes169841
SOURCE (Princeton)ZNF169
Genetics Home Reference (NIH)ZNF169
Genomic and cartography
GoldenPath hg38 (UCSC)ZNF169  -     chr9:94259266-94301829 +  9q22.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZNF169  -     9q22.32   [Description]    (hg19-Feb_2009)
GoldenPathZNF169 - 9q22.32 [CytoView hg19]  ZNF169 - 9q22.32 [CytoView hg38]
ImmunoBaseENSG00000175787
Mapping of homologs : NCBIZNF169 [Mapview hg19]  ZNF169 [Mapview hg38]
OMIM603404   
Gene and transcription
Genbank (Entrez)AK093956 AK122832 AK289742 BC011947 BC019228
RefSeq transcript (Entrez)NM_001301275 NM_003448 NM_194320
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZNF169
Cluster EST : UnigeneHs.387623 [ NCBI ]
CGAP (NCI)Hs.387623
Alternative Splicing GalleryENSG00000175787
Gene ExpressionZNF169 [ NCBI-GEO ]   ZNF169 [ EBI - ARRAY_EXPRESS ]   ZNF169 [ SEEK ]   ZNF169 [ MEM ]
Gene Expression Viewer (FireBrowse)ZNF169 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)169841
GTEX Portal (Tissue expression)ZNF169
Human Protein AtlasENSG00000175787-ZNF169 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14929   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14929  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14929
Splice isoforms : SwissVarQ14929
PhosPhoSitePlusQ14929
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZNF169
DMDM Disease mutations169841
Blocks (Seattle)ZNF169
SuperfamilyQ14929
Human Protein Atlas [tissue]ENSG00000175787-ZNF169 [tissue]
Peptide AtlasQ14929
HPRD04554
IPIIPI00796887   IPI00448693   IPI00553207   IPI00385469   IPI00001525   
Protein Interaction databases
DIP (DOE-UCLA)Q14929
IntAct (EBI)Q14929
FunCoupENSG00000175787
BioGRIDZNF169
STRING (EMBL)ZNF169
ZODIACZNF169
Ontologies - Pathways
QuickGOQ14929
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  protein binding  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZNF169
Atlas of Cancer Signalling NetworkZNF169
Wikipedia pathwaysZNF169
Orthology - Evolution
OrthoDB169841
GeneTree (enSembl)ENSG00000175787
Phylogenetic Trees/Animal Genes : TreeFamZNF169
HOGENOMQ14929
Homologs : HomoloGeneZNF169
Homology/Alignments : Family Browser (UCSC)ZNF169
Gene fusions - Rearrangements
Fusion : QuiverZNF169
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZNF169 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZNF169
dbVarZNF169
ClinVarZNF169
1000_GenomesZNF169 
Exome Variant ServerZNF169
ExAC (Exome Aggregation Consortium)ENSG00000175787
GNOMAD BrowserENSG00000175787
Varsome BrowserZNF169
Genetic variants : HAPMAP169841
Genomic Variants (DGV)ZNF169 [DGVbeta]
DECIPHERZNF169 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZNF169 
Mutations
ICGC Data PortalZNF169 
TCGA Data PortalZNF169 
Broad Tumor PortalZNF169
OASIS PortalZNF169 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZNF169  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZNF169
Mutations and Diseases : HGMDZNF169
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZNF169
DgiDB (Drug Gene Interaction Database)ZNF169
DoCM (Curated mutations)ZNF169 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZNF169 (select a term)
intoGenZNF169
Cancer3DZNF169(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603404   
Orphanet
DisGeNETZNF169
MedgenZNF169
Genetic Testing Registry ZNF169
NextProtQ14929 [Medical]
TSGene169841
GENETestsZNF169
Target ValidationZNF169
Huge Navigator ZNF169 [HugePedia]
snp3D : Map Gene to Disease169841
BioCentury BCIQZNF169
ClinGenZNF169
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD169841
Chemical/Pharm GKB GenePA37539
Clinical trialZNF169
Miscellaneous
canSAR (ICR)ZNF169 (select the gene name)
DataMed IndexZNF169
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZNF169
EVEXZNF169
GoPubMedZNF169
iHOPZNF169
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:13:42 CEST 2019
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